Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01974 ATGACACCTTATAAAATTTTCCTTAAAAAACCTCTTATCTCAATTTCTCGAGGAAATCGGCATAAGGCCATGGAGACCACTCCCGCCGCCTCCGCCGTCGTCGTTAGCAATACCCCAAGCATCGCGTCGGAGAAACGTAACCGTTCCATCTTCGACGTCCCGGCCGACTTCTTCGATTCATGCAGACTCCTTCGTTCTCCACACTCATACATCTCATCAACCAGCGGCAGCAACAGGGACAGCCCAAGCGCAGAAAACACAGTCGATTCGGAGCAGAACTCTAGGGATTTCAAAGAAAGTTCCGTCGCCCACAGATGGACCTGCAACACATGCAAGGCCGAGTTTGAGTCCCTGCTTGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGATTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATCTCTGGATCAGAGGACGAAACTGAGAAGGAGATTAATTCTCGGAATGAAGGGTCTAAGGGAACAAGTGATAATGTGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACAGGTGAAAGAGCTTCGGTTTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCATACGAAGACGATAAAACATCAATCAGTGGCAATGGCGTTCATGCACAGCACTTTAGAGAGAATGAAATCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCTCCCATTTGCGGATAGTGTTACTTGCAAGTGGTGGTCACTTTGCGGGTTGTGTATTCGATGGGAACTCGGTCGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAACAGTCATCAAAAGATGCAAGTGGCAAATCAATCAGTTCCGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTACTTTAATGCTTCATCTTGCGTTTATATTTATGCTCCTTCAAACAATCGGCAGTTGCTTTTTAATGGAGATAAGCCTTACTTTAGTGATCAGCACGCTGCTGTTCGGAATATTCCTTTGACTGTTAGAAGGCCTACATTGAAAGAAGCTCGGCATGTTTATGAACAATTGGTGCAAGTAGCGTACGAAGTAGATGAGAAGGAAATATTGTCCACCAGTGAGCATGATTCACTTTTAAGTGCAGTTACAACGGACAATGGCACCCGAGGTGTAAGTGGACAGGAAGTAATTGGAGATTTGGAAAAGGATGCTTGTACACATCTTGAAGAATCTGTTGAACACCCCAAAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACACCTTTACATGAAGCATCACAGTCTGGAAATGCAGATAAGGTTTTCGATCTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGACGAAAGAGGACGTACTCCTTACATGCTAGCAAGTGAGAAGGAAGTCCGGAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCCAGCGCATTAACCAAGGAAATGGAGGAATCTCAAACAGCCAAGCAGGCTGAAAAAGATGCCAAGCGAAAGGCAAGAGCAAAGGAATTGAAAAAATTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCCAGGAGGCTGAATCTCAAAAGGCTGTGAAGACGGAACAGAGTAGAGGAATTGGCTCTATTTCGAATTCTCGGGCTGAATCCACCAGTGGGAAACTGATTACCAAAGAGATGGCGCAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGAAGAATGGCAGCCATGGCTGCAGCTGCAGCCACCAACAATTCCTCGTCAACTACTCCTAACAACTCGCAGACTAAAAGCGGGTTGGCGGGGGATGTCAACTGCTCCTGCTGCAGTACTTCACTGGCCGGTAAAGTTCCTTTCCACCGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCGAAGTCTGCCGAGGCAAAACTTTTTGGCATTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACGGGGAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCTAGAGAAGATTCATGTGCATACTTTGCAGACACAAACTGGACCAGGTGATCGTCCTCTCGCGGAGATCAGGCTCAATCGAGGTTTCAAAATCCCCGCCAAAATTCTCACTCTCCATCTCCATCTCTCAAGACTCACAACAATGGAGGATGAAGATGCTAATCCTGAAACCACCGCCAATCCTCCCAAATCCGAAGATGGCACTGGCTCCCAATCAATCTCCTCCGACCCTTCTCCTCCGCCTCCGCCTTGTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCAACTCTGCAGATGAAGCGCTCCCCAAGAAGACATTGAGTCCTCGGGAATTCGTCCTCGCAGTCGCCTCCAGCATAGCTTCCCACCCTCTGCAGAAATTCGATTCTAACGTTTGGGGCGTTCTCACTGGCATTTCCCCCAATGCCCGTAAGCGCCAACAGGGTATAAATATTCTTTTGACTGATGATGAACACTGCCTCGGTCGAATGGCGCCAGATAGTCGATACCAGATTGACTCTAATTCAGTCAGCGCACAACATTGCAAAATCTTTAGGAAGAGCACCGAAGATGCCTGTTCTCCATCAGTTTTCCTCAAAGATACAAGGTTGTCTATTGCGAACACAAATGGAACATATATAAACTGGGAGAGGTTGAAGAAGAATAGTCAGGAGGCTAAAATCTGCCATGGGGACATCATATCACTTGCTGCAGCTCCACAGCATGAGGTCGCATTTGCATTTGTCTATAGAGAGGTGGCTGCAGTTACTTCATCATCAGGTGGTGGATCTGCAAAAAGAAAAGCAGGTCAAATGGCACTCCCGACAGGTCAAATGGCACCCCCGACAAGTCAGATGGCACCCCCGACAGGTCAGATGGCACCCCCAACAGGTCAAATGGCACCCCCACGTTGTCCAGTGGATTTTGTTCCTGAAAACAAAAGGCTAAGAGGTCTTGGAATTGGTGCTCCTTATGGTCCGATATCTCTTGACGATTTTCGAAGTCTTCAACGATCAAATAAAGAGCTTAGGAAGCAGTTGGAGGATCATGTGCTTATGATAGATTCATTGCGTAATGAAAATCGTGTATCCTTGGAGCACCATGAACATCAGTTGATTGACGATGAACGGAAGGAGCTTGGGGAGGTTCAAAGAATATCTTCCGCACAAAAACATGTTATAGAAGATCTTCAAGAAAGACTCAGTGCTACTGCTCAGTCATGTAATGAAGCAAATGAAATAATAAATAGCCAGAAGGCATCTTTAAGCGAATTGAAGGTTCAAATTGATGAAGAACGTGATCAGAGACGAGAAGAGCGAGAGAAGGCTGCTGCAGATCTGAAGGCAGCTGTACAGAAAGCTCATGCAGAGGCTCAAGATGAATTAAAACGCCTTTCTGATGCTACCTCAAGGCTTGAAAGAGAACAGCAAGAAGTAATCAATAAACTTCAGGAGGAGACTAGACAGAAATTAGTCATGTCGGACAATAAAGTTCGCCAGCTAGAATCTCAACTTGGTGAAGAGCACCTATCCTGTACGAATGAAAGAAAAAAAGTTGAAGAACTTGAACGTGGAATAAAAGAACTGCAGAAAGAGCTTGAGAGTGAAAAGGGAGCAAGAGAAGAGGCTTGGTCTAAGGTATCATCCCTAGAACTTGAAATAAATGCTGCAATACGGGATCTTGATTTTGAGAGGAGGAGGCTAAAAGGTGCTAGGGAAAGAATTATGCTTCGGGAAACACAGCTACGAGCATTTTATTCTACTACCGAAGAAATTTCAGCTTTGTTTGCCAAGCAGCAGGAGCAATTGAAAACAATGCAAAGGACTCTAGAAGATGAAGAGAATTATGAAAACACTTCTTTTGATTTTGATCTCAATGTGCCCCCTGAGCCTGCAAATAGAAATTTACTTGGAGAAAATGTACGGATGAACTATTGTAACAACTCTGCCAAAGCTAGTTCAGCTATGTCAGCTCAGAGGTTCGAGCCAGTCCAAGGTGAGACGTCTACTGACGAAGCCAGCACTGAAAAGAACGACTGTGATTTCGGAAGTCAAGAATGTCAGAATACTCAAGAGGTAGAATTCACAAGTGCTGATGTTGGTGTTAAGGGAGGTTTTGGTTCTGACATTGATGGCGTTGGCACAGCTCCTGTTTTGGAAGGAGATATAGTTGGGACTGAACGGGTTCTTGAAACGGAAAGTCCTGGAGTTGATGGTGATCGAACCATGGATTTGAACAAGGGTATGACCTTAGCAGGCGAAACAATGTGTCTTGATGATGAAGGTTGTGCAAGAGAGATGGATGAACAGGCTAAGATAGTTCATCGGGAAGCTTATTGTCACTCTCAGACAAACCAAACATGTGATGCTGTCGATGCGATGGAAGACACTGAAGCTGGTGGAACAGTCAGAACTGCAGACCTCTTAGCTTCTGAAGTTGCTGGTAGCTGGGCTTCCAGTACTGCGCCATCTGTTCACGGTGAGAACGAGTCTCAAAGAAGCAAAGGCAATGAGGAAGAAGGTGATGGAGCTCTTCATGACTCCAACAGCCCGCTCTCAGGGAGTCAAGGTACTCTTTTCAAGCCTGTTGCAACAAAATGGAACTCTGAGCACCAGACTTTAAGCGAGATGATCAGAATAGTTGCTCCTGAATCAAAACAGTTTTTTCGCTCTACAAAGGATGGTCCTGAGGGGGAAGAGGACACTGCATCTGGCTCAGATACAGAAAATTGCTCGGATAATGATGACGATGCACACGATAATAATGAAACCAAAGCCAAGGAAGGGAGAGTCTCAGATTCAGAAACTCAAGGAGTCGATGTCGATGTAATGGATCCAAAACCAGACGATCCAATGGATGAAGATGTTGAAGAAACCCAACAAGATTCTGTAGGATAA 5172 45.11 MTPYKIFLKKPLISISRGNRHKAMETTPAASAVVVSNTPSIASEKRNRSIFDVPADFFDSCRLLRSPHSYISSTSGSNRDSPSAENTVDSEQNSRDFKESSVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEINSRNEGSKGTSDNVNKKRLFVHLQTGERASVWKCLLINESDNISYEDDKTSISGNGVHAQHFRENEIIARLKYLNHEPRDGSHLRIVLLASGGHFAGCVFDGNSVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHAAVRNIPLTVRRPTLKEARHVYEQLVQVAYEVDEKEILSTSEHDSLLSAVTTDNGTRGVSGQEVIGDLEKDACTHLEESVEHPKTSESESEVICRTTPLHEASQSGNADKVFDLLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQTAKQAEKDAKRKARAKELKKLKKEKAKKAQAQEAESQKAVKTEQSRGIGSISNSRAESTSGKLITKEMAQAAEREKRAAAAERRMAAMAAAAATNNSSSTTPNNSQTKSGLAGDVNCSCCSTSLAGKVPFHRLLLCTQISETSSARFFAMKSRSLPRQNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKLEKIHVHTLQTQTGPGDRPLAEIRLNRGFKIPAKILTLHLHLSRLTTMEDEDANPETTANPPKSEDGTGSQSISSDPSPPPPPCLPPLPPPPPPPPLNSADEALPKKTLSPREFVLAVASSIASHPLQKFDSNVWGVLTGISPNARKRQQGINILLTDDEHCLGRMAPDSRYQIDSNSVSAQHCKIFRKSTEDACSPSVFLKDTRLSIANTNGTYINWERLKKNSQEAKICHGDIISLAAAPQHEVAFAFVYREVAAVTSSSGGGSAKRKAGQMALPTGQMAPPTSQMAPPTGQMAPPTGQMAPPRCPVDFVPENKRLRGLGIGAPYGPISLDDFRSLQRSNKELRKQLEDHVLMIDSLRNENRVSLEHHEHQLIDDERKELGEVQRISSAQKHVIEDLQERLSATAQSCNEANEIINSQKASLSELKVQIDEERDQRREEREKAAADLKAAVQKAHAEAQDELKRLSDATSRLEREQQEVINKLQEETRQKLVMSDNKVRQLESQLGEEHLSCTNERKKVEELERGIKELQKELESEKGAREEAWSKVSSLELEINAAIRDLDFERRRLKGARERIMLRETQLRAFYSTTEEISALFAKQQEQLKTMQRTLEDEENYENTSFDFDLNVPPEPANRNLLGENVRMNYCNNSAKASSAMSAQRFEPVQGETSTDEASTEKNDCDFGSQECQNTQEVEFTSADVGVKGGFGSDIDGVGTAPVLEGDIVGTERVLETESPGVDGDRTMDLNKGMTLAGETMCLDDEGCAREMDEQAKIVHREAYCHSQTNQTCDAVDAMEDTEAGGTVRTADLLASEVAGSWASSTAPSVHGENESQRSKGNEEEGDGALHDSNSPLSGSQGTLFKPVATKWNSEHQTLSEMIRIVAPESKQFFRSTKDGPEGEEDTASGSDTENCSDNDDDAHDNNETKAKEGRVSDSETQGVDVDVMDPKPDDPMDEDVEETQQDSVG 1723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26855016 26878500 - Lsi05G019740.1 Lsi05g01974 664466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1589 1603 - -
Lsi05g01974 1723 CDD FHA 905 994 IPR000253 GO:0005515
Lsi05g01974 1723 Gene3D - 696 772 IPR029000 -
Lsi05g01974 1723 Gene3D - 895 1026 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1673 1704 - -
Lsi05g01974 1723 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 702 756 IPR002130 GO:0000413|GO:0003755
Lsi05g01974 1723 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 543 557 - -
Lsi05g01974 1723 SUPERFAMILY Cyclophilin-like 702 757 IPR029000 -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1035 1050 - -
Lsi05g01974 1723 PANTHER SMAD/FHA DOMAIN-CONTAINING PROTEIN 850 1723 - -
Lsi05g01974 1723 Coils Coil 1152 1262 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1640 1723 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1573 1617 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1573 1588 - -
Lsi05g01974 1723 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 702 750 IPR002130 GO:0000413|GO:0003755
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 633 652 - -
Lsi05g01974 1723 SUPERFAMILY SMAD/FHA domain 871 1003 IPR008984 GO:0005515
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 70 96 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 538 607 - -
Lsi05g01974 1723 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 713 730 IPR020892 GO:0003755|GO:0006457
Lsi05g01974 1723 SUPERFAMILY Ankyrin repeat 466 518 IPR036770 -
Lsi05g01974 1723 Gene3D - 432 583 IPR036770 -
Lsi05g01974 1723 Pfam Bacteroidetes VLRF1 release factor 262 400 IPR041175 -
Lsi05g01974 1723 SMART FHA_2 916 977 IPR000253 GO:0005515
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1035 1057 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 831 856 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 579 607 - -
Lsi05g01974 1723 Coils Coil 540 582 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 1705 1723 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 70 90 - -
Lsi05g01974 1723 Coils Coil 1098 1118 - -
Lsi05g01974 1723 ProSiteProfiles Forkhead-associated (FHA) domain profile. 917 977 IPR000253 GO:0005515
Lsi05g01974 1723 Coils Coil 1354 1374 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 803 859 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 164 181 - -
Lsi05g01974 1723 ProSiteProfiles Ankyrin repeat profile. 464 496 IPR002110 GO:0005515
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 163 187 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 635 652 - -
Lsi05g01974 1723 MobiDBLite consensus disorder prediction 808 830 - -
Lsi05g01974 1723 Coils Coil 1305 1332 - -
Lsi05g01974 1723 Coils Coil 1270 1297 - -
Lsi05g01974 1723 Pfam FHA domain 919 994 IPR000253 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01974 Lsi-Chr5:26855016 Lsi01g00896 Lsi-Chr1:7212493 9.58E-18 dispersed
Lsi05g01974 Lsi-Chr5:26855016 Lsi11g01025 Lsi-Chr11:17432350 8.45E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01974 - - csv:101216456 1336.24