Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01978 | ATGGAAGTGAATTTCAACATCTTCACCTTCTTTTCCATCCTTCTCTCCCTCTTCTTTCTCTCCTTCTTCATTCTCCTCATCCGAACCCTAGCCGGAAAGTCCATAACCAACTCCGACTACTCGCCGGTATACGGCACAATCTATGGCCAGGCTTTCTACTTCAACAACCTATACGACCATCTGACGGCGGTGGCGAAACGGCATCGAACCTTCCGACTGATCGGGACGGCGTTCAGCGAGATATACACGGTCGATCCAAGAAACATCGAGCATATATTGAAGACGAAATTCGACAAGTACTCTAAAGGAAGGAAAGATCAAGAAGTGTGTGGGGATTTGTTCGGAAAGGGAATATTTTTGGTGGATGGAGAAAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAAGATTCTTAGGGATTTTAGTTGCTCTGTTTTCAGAAGAAATGCGGCTAAACTTGTCGGAATTCTTTCGGAGTTCTCCGCCACGGCTCGGGTCTTCGATGTTCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTTGGATTCGGCGTCGATTTGAATTGCATGGAGGAACCAATCAAAGCAGGGAGCGGGTTCATGAAGGCCTTCGATGATTCTAGCGCTCAGGTTTTCTGGCGCTACATCGATCCTTTCTGGAAATTGAAAAGATTTCTCAACATTGGTTCCGAAGCTTCGTTTAGGAACAACCTCAAAGTAATCGATGCTTTTGTGCACCAGTTGATCAGTGCCAGGAGAAAATTGCTTCACCAACCAAATCTCAAGAATGACAAGGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCAACAAGAATGAATGATCAATATCTAAGAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATACAAGTGCAGGAACTCTTTCTTGGTTCTTCTATATGCTATGCAAGAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAGATGGAAGGACTGCAGAAATAGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGGGATGGAGTATACTACTTAGCCTATTCCATGGGCAGGATGCCTTGCCTTTGGGGAGAAGATACTGAAGATTTTAAACCAGAGAGATGGCTTGAAAATGGAAATTTTCGATCCGAATCGCCTTTCAAATTCATCGCATTTCATGTGAGTATTGATTTTGTATTAAATTCATCGCATTTCATGAAGGAAACGGTCGATGAAACGATGCGTTTAAGAAGGTTAAATACACACGGTGTAAGATTTCAAATTCATTCAACGTCCCCAATTCCCCCTCGCTTTGCTCCGTCTCCACATTTCTTGCTACCGGAGTTCGACGGTGGCGATCCGATGAAATCTTTGGCGAAGGACGATAACGAATCTCCGAAGCGGCAATGGTCCTTGCAAGACTTCGACGTAGGAAAGCCCCTCGGCAAAGGAAAATTCGGCAGAGTCTATCTAGCAAGAGAAAGCAAGTATATAGTAGCACTGAAGGTGATTTTCAAGGAGCAGATGGAGAAGTACAGAATTCATCATCAGTTAAGGAGAGAGATGGAAATCCAGACCAGTCTTCGGCACCCCAACATTCTGCGCCTCTATGGATGGTTTCATGATGCTGAACGGATTTTCTTGATATTGGAATACGCTCACCGTGGTGAGCTTTATAGGGAGCTTAGGAAAAATGGTTATCTCAGCGAGAAGCAAGCTGCCACTTACATTTTAAGCCTCACACAAGCATTGGCATACTGCCATGAGAAGCATGTGATTCACAGGGACATTAAGCCAGAAAATTTGCTGCTTGATCATGAGGGCCGGTTGAAAATTGCAGATTTTGGATGGTCTGTACAATCAAGAAGCAAGAGACATACCATGTGTGGAACTCTGGATTACTTAGCCCCAGAAATGGTGGAGAATAAAGCTCACGACTATGCAGTAGATAATTGGACTTTGGGCATCCTTTCCTATGAGTTCCTGTATGGTGTGCCTCCATTTGAAGCTGAGAGTCAAAGTGACACGTTTAAAAGGATTGTGAAGGTTGATTTGAATTTTCCTTTGGCCCCTCATGTTTCTTCAGAGGCAAAAGATCTAATAGGCCGGCTCTTGGTGAAGGATTCCTCTAGAAGACTTTCACTTAAGAAGATAGTGGAGCATCCTTGGATAATCAAGAATGCAGATCCATCTGGTATTTGCAATACTAAGTAG | 2238 | 43.7 | MEVNFNIFTFFSILLSLFFLSFFILLIRTLAGKSITNSDYSPVYGTIYGQAFYFNNLYDHLTAVAKRHRTFRLIGTAFSEIYTVDPRNIEHILKTKFDKYSKGRKDQEVCGDLFGKGIFLVDGEKWKQQRKLASYEFSTKILRDFSCSVFRRNAAKLVGILSEFSATARVFDVQDLLMRCSLDSIFKVGFGVDLNCMEEPIKAGSGFMKAFDDSSAQVFWRYIDPFWKLKRFLNIGSEASFRNNLKVIDAFVHQLISARRKLLHQPNLKNDKEDILSRFLMESEKDPTRMNDQYLRDIVLNFMLAGRDTSAGTLSWFFYMLCKNPLIQEKVAEEDGRTAEIDDILPDGYKLRKGDGVYYLAYSMGRMPCLWGEDTEDFKPERWLENGNFRSESPFKFIAFHVSIDFVLNSSHFMKETVDETMRLRRLNTHGVRFQIHSTSPIPPRFAPSPHFLLPEFDGGDPMKSLAKDDNESPKRQWSLQDFDVGKPLGKGKFGRVYLARESKYIVALKVIFKEQMEKYRIHHQLRREMEIQTSLRHPNILRLYGWFHDAERIFLILEYAHRGELYRELRKNGYLSEKQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILSYEFLYGVPPFEAESQSDTFKRIVKVDLNFPLAPHVSSEAKDLIGRLLVKDSSRRLSLKKIVEHPWIIKNADPSGICNTK | 745 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 26884548 | 26895172 | - | Lsi05G019780.1 | Lsi05g01978 | 664470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01978 | 745 | PANTHER | CYTOCHROME P450 | 335 | 405 | - | - | |
Lsi05g01978 | 745 | PANTHER | CYTOCHROME P450 | 6 | 334 | - | - | |
Lsi05g01978 | 745 | Gene3D | Cytochrome P450 | 337 | 404 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi05g01978 | 745 | ProSiteProfiles | Protein kinase domain profile. | 483 | 732 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01978 | 745 | Pfam | Protein kinase domain | 484 | 732 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01978 | 745 | CDD | STKc_Aurora | 482 | 732 | - | - | |
Lsi05g01978 | 745 | Gene3D | Transferase(Phosphotransferase) domain 1 | 565 | 741 | - | - | |
Lsi05g01978 | 745 | SUPERFAMILY | Protein kinase-like (PK-like) | 475 | 736 | IPR011009 | - | |
Lsi05g01978 | 745 | ProSitePatterns | Protein kinases ATP-binding region signature. | 489 | 514 | IPR017441 | GO:0005524 | |
Lsi05g01978 | 745 | Gene3D | Phosphorylase Kinase; domain 1 | 471 | 564 | - | - | |
Lsi05g01978 | 745 | Gene3D | Cytochrome P450 | 41 | 336 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi05g01978 | 745 | PANTHER | CYTOCHROME P450, FAMILY 704, SUBFAMILY A, POLYPEPTIDE 1 | 335 | 405 | - | - | |
Lsi05g01978 | 745 | PANTHER | CYTOCHROME P450, FAMILY 704, SUBFAMILY A, POLYPEPTIDE 1 | 6 | 334 | - | - | |
Lsi05g01978 | 745 | SMART | serkin_6 | 483 | 732 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01978 | 745 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 600 | 612 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi05g01978 | 745 | Pfam | Cytochrome P450 | 54 | 334 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi05g01978 | 745 | Pfam | Cytochrome P450 | 341 | 400 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi05g01978 | 745 | SUPERFAMILY | Cytochrome P450 | 42 | 401 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02318 | Lsi-Chr4:30387878 | Lsi05g01978 | Lsi-Chr5:26884548 | 9.53E-132 | dispersed | |
Lsi05g01978 | Lsi-Chr5:26884548 | Lsi11g00985 | Lsi-Chr11:16390830 | 1.13E-86 | dispersed | |
Lsi05g01978 | Lsi-Chr5:26884548 | Lsi05g01984 | Lsi-Chr5:26947579 | 1.49E-109 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83683 | PF00067 | p450 | 2.50E-34 | No_clan | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01978 | - | - | csv:101210732 | 695.271 |