Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01978 ATGGAAGTGAATTTCAACATCTTCACCTTCTTTTCCATCCTTCTCTCCCTCTTCTTTCTCTCCTTCTTCATTCTCCTCATCCGAACCCTAGCCGGAAAGTCCATAACCAACTCCGACTACTCGCCGGTATACGGCACAATCTATGGCCAGGCTTTCTACTTCAACAACCTATACGACCATCTGACGGCGGTGGCGAAACGGCATCGAACCTTCCGACTGATCGGGACGGCGTTCAGCGAGATATACACGGTCGATCCAAGAAACATCGAGCATATATTGAAGACGAAATTCGACAAGTACTCTAAAGGAAGGAAAGATCAAGAAGTGTGTGGGGATTTGTTCGGAAAGGGAATATTTTTGGTGGATGGAGAAAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAAGATTCTTAGGGATTTTAGTTGCTCTGTTTTCAGAAGAAATGCGGCTAAACTTGTCGGAATTCTTTCGGAGTTCTCCGCCACGGCTCGGGTCTTCGATGTTCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTTGGATTCGGCGTCGATTTGAATTGCATGGAGGAACCAATCAAAGCAGGGAGCGGGTTCATGAAGGCCTTCGATGATTCTAGCGCTCAGGTTTTCTGGCGCTACATCGATCCTTTCTGGAAATTGAAAAGATTTCTCAACATTGGTTCCGAAGCTTCGTTTAGGAACAACCTCAAAGTAATCGATGCTTTTGTGCACCAGTTGATCAGTGCCAGGAGAAAATTGCTTCACCAACCAAATCTCAAGAATGACAAGGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCAACAAGAATGAATGATCAATATCTAAGAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATACAAGTGCAGGAACTCTTTCTTGGTTCTTCTATATGCTATGCAAGAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAGATGGAAGGACTGCAGAAATAGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGGGATGGAGTATACTACTTAGCCTATTCCATGGGCAGGATGCCTTGCCTTTGGGGAGAAGATACTGAAGATTTTAAACCAGAGAGATGGCTTGAAAATGGAAATTTTCGATCCGAATCGCCTTTCAAATTCATCGCATTTCATGTGAGTATTGATTTTGTATTAAATTCATCGCATTTCATGAAGGAAACGGTCGATGAAACGATGCGTTTAAGAAGGTTAAATACACACGGTGTAAGATTTCAAATTCATTCAACGTCCCCAATTCCCCCTCGCTTTGCTCCGTCTCCACATTTCTTGCTACCGGAGTTCGACGGTGGCGATCCGATGAAATCTTTGGCGAAGGACGATAACGAATCTCCGAAGCGGCAATGGTCCTTGCAAGACTTCGACGTAGGAAAGCCCCTCGGCAAAGGAAAATTCGGCAGAGTCTATCTAGCAAGAGAAAGCAAGTATATAGTAGCACTGAAGGTGATTTTCAAGGAGCAGATGGAGAAGTACAGAATTCATCATCAGTTAAGGAGAGAGATGGAAATCCAGACCAGTCTTCGGCACCCCAACATTCTGCGCCTCTATGGATGGTTTCATGATGCTGAACGGATTTTCTTGATATTGGAATACGCTCACCGTGGTGAGCTTTATAGGGAGCTTAGGAAAAATGGTTATCTCAGCGAGAAGCAAGCTGCCACTTACATTTTAAGCCTCACACAAGCATTGGCATACTGCCATGAGAAGCATGTGATTCACAGGGACATTAAGCCAGAAAATTTGCTGCTTGATCATGAGGGCCGGTTGAAAATTGCAGATTTTGGATGGTCTGTACAATCAAGAAGCAAGAGACATACCATGTGTGGAACTCTGGATTACTTAGCCCCAGAAATGGTGGAGAATAAAGCTCACGACTATGCAGTAGATAATTGGACTTTGGGCATCCTTTCCTATGAGTTCCTGTATGGTGTGCCTCCATTTGAAGCTGAGAGTCAAAGTGACACGTTTAAAAGGATTGTGAAGGTTGATTTGAATTTTCCTTTGGCCCCTCATGTTTCTTCAGAGGCAAAAGATCTAATAGGCCGGCTCTTGGTGAAGGATTCCTCTAGAAGACTTTCACTTAAGAAGATAGTGGAGCATCCTTGGATAATCAAGAATGCAGATCCATCTGGTATTTGCAATACTAAGTAG 2238 43.7 MEVNFNIFTFFSILLSLFFLSFFILLIRTLAGKSITNSDYSPVYGTIYGQAFYFNNLYDHLTAVAKRHRTFRLIGTAFSEIYTVDPRNIEHILKTKFDKYSKGRKDQEVCGDLFGKGIFLVDGEKWKQQRKLASYEFSTKILRDFSCSVFRRNAAKLVGILSEFSATARVFDVQDLLMRCSLDSIFKVGFGVDLNCMEEPIKAGSGFMKAFDDSSAQVFWRYIDPFWKLKRFLNIGSEASFRNNLKVIDAFVHQLISARRKLLHQPNLKNDKEDILSRFLMESEKDPTRMNDQYLRDIVLNFMLAGRDTSAGTLSWFFYMLCKNPLIQEKVAEEDGRTAEIDDILPDGYKLRKGDGVYYLAYSMGRMPCLWGEDTEDFKPERWLENGNFRSESPFKFIAFHVSIDFVLNSSHFMKETVDETMRLRRLNTHGVRFQIHSTSPIPPRFAPSPHFLLPEFDGGDPMKSLAKDDNESPKRQWSLQDFDVGKPLGKGKFGRVYLARESKYIVALKVIFKEQMEKYRIHHQLRREMEIQTSLRHPNILRLYGWFHDAERIFLILEYAHRGELYRELRKNGYLSEKQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILSYEFLYGVPPFEAESQSDTFKRIVKVDLNFPLAPHVSSEAKDLIGRLLVKDSSRRLSLKKIVEHPWIIKNADPSGICNTK 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26884548 26895172 - Lsi05G019780.1 Lsi05g01978 664470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01978 745 PANTHER CYTOCHROME P450 335 405 - -
Lsi05g01978 745 PANTHER CYTOCHROME P450 6 334 - -
Lsi05g01978 745 Gene3D Cytochrome P450 337 404 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01978 745 ProSiteProfiles Protein kinase domain profile. 483 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01978 745 Pfam Protein kinase domain 484 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01978 745 CDD STKc_Aurora 482 732 - -
Lsi05g01978 745 Gene3D Transferase(Phosphotransferase) domain 1 565 741 - -
Lsi05g01978 745 SUPERFAMILY Protein kinase-like (PK-like) 475 736 IPR011009 -
Lsi05g01978 745 ProSitePatterns Protein kinases ATP-binding region signature. 489 514 IPR017441 GO:0005524
Lsi05g01978 745 Gene3D Phosphorylase Kinase; domain 1 471 564 - -
Lsi05g01978 745 Gene3D Cytochrome P450 41 336 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01978 745 PANTHER CYTOCHROME P450, FAMILY 704, SUBFAMILY A, POLYPEPTIDE 1 335 405 - -
Lsi05g01978 745 PANTHER CYTOCHROME P450, FAMILY 704, SUBFAMILY A, POLYPEPTIDE 1 6 334 - -
Lsi05g01978 745 SMART serkin_6 483 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01978 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Lsi05g01978 745 Pfam Cytochrome P450 54 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01978 745 Pfam Cytochrome P450 341 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01978 745 SUPERFAMILY Cytochrome P450 42 401 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02318 Lsi-Chr4:30387878 Lsi05g01978 Lsi-Chr5:26884548 9.53E-132 dispersed
Lsi05g01978 Lsi-Chr5:26884548 Lsi11g00985 Lsi-Chr11:16390830 1.13E-86 dispersed
Lsi05g01978 Lsi-Chr5:26884548 Lsi05g01984 Lsi-Chr5:26947579 1.49E-109 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83683 PF00067 p450 2.50E-34 No_clan Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01978 - - csv:101210732 695.271