Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01991 ATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAACTTTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGGGCGATATCTAAGGCATACAAGATCAGAAACCCATCATCTTCAACCTTTATCTCATCAACACGATTTACAAGCTGTTCAGAATGAGGCTGCAAGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCCCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAAAGAAAAGTTAGCAGAAGTTTCACCTTGTCCAGAAAGTAGCTCCATCTCAGACGTTGAAACGGATTTGTCCATTGGACCTCCCAAGTCCAGATCTAAGTGA 567 42.68 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSETHHLQPLSHQHDLQAVQNEAASLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLKEKLAEVSPCPESSSISDVETDLSIGPPKSRSK 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26983362 26990366 - Lsi05G019910.1 Lsi05g01991 664483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01991 188 PANTHER MADS-BOX PROTEIN SOC1 1 160 - -
Lsi05g01991 188 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 MobiDBLite consensus disorder prediction 158 188 - -
Lsi05g01991 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Lsi05g01991 188 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Lsi05g01991 188 Coils Coil 123 143 - -
Lsi05g01991 188 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Lsi05g01991 188 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 PANTHER MADS BOX PROTEIN 1 160 - -
Lsi05g01991 188 MobiDBLite consensus disorder prediction 165 188 - -
Lsi05g01991 188 Pfam K-box region 84 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01991 188 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01991 188 Coils Coil 89 116 - -
Lsi05g01991 188 ProSiteProfiles K-box domain profile. 89 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01991 Lsi09g01915 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00825 Lsi-Chr1:6548261 Lsi05g01991 Lsi-Chr5:26983362 3.38E-32 dispersed
Lsi05g01991 Lsi-Chr5:26983362 Lsi09g00321 Lsi-Chr9:3331222 1.89E-63 dispersed
Lsi04g01716 Lsi-Chr4:24503790 Lsi05g01991 Lsi-Chr5:26983362 6.93E-32 transposed
Lsi05g01277 Lsi-Chr5:20508941 Lsi05g01991 Lsi-Chr5:26983362 6.29E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25421 PF01486 K-box 7.50E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01991 - - csv:101209501 301.982