Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02010 ATGAGTTTTCTGGCACGATTTGACTCTAGCGACGGCGACGGCAATTTTATGGCCTCTGGTGCTATTGCTCAGCCACATCTTGTTGCTCAATCTTCTTTTACCAAATCCATGTTCTCTTCCCCATCGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCACCGGGGAGATGGTTCCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGCGGTGGTGGTAGGAAGAAGAGGAAGAAACGGTACCACCGTCATAGTGTGGAACAGATCCAAGAATTGGAAGCTATGTTCAAAGAATGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTGGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACTCAATTGGAACGCCATGAAAACACATTACTAAGACAAGAGAATGAGAAGCTCCGAACAGAGAACATGGCAATTCGAGAGGCCATGAGGAATCCAATCTGTTCCAACTGCGGCGGACCAGCCATCATCGGAGAAATCTCGGTTGAAGAACAGCAACTCCGAATCGAAAACGCTCGATTAAAGGACGAATTGGACCGGGTGTGTGCTCTAGCCGGGAAATTCCTGGGGCGAGTGGCAGTTCCGGTATCGCCGCCATTGGGGTCGAGCTCGTGTTTGGAGGAATATGGAGGTGGAATGATGATGATGGAGAGATGTGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGGTTGTGAAAATGGCAAATGGAGAAGAACCATTGTGGGTTGGAGAGAAACTGAATGAAGAAGAATATTTGAGAATGATCAATGGAAGTTGTTTTGGGATTAAATCCATTAATAATGGCTTTGTTTCTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACTTGGTCGCGACGGCAAGCACCACCGACGTAATATCCGGCGGCATGGGAGGAACCCGGAACGGCGCTCTTCAACTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCAGTTCGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGAACGCCGAAGGCGTTTGGGCCGTTGTCGACGTCTCCATCGATCCCATTACCGAATCTTCGTCCTCGCCACCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGAGATGCCCAATGGCTACTCTAAGGTTACTTGGGTTGAGCATTCGGAATACGATGAAAGTTACATTCACGAGCTGTATCGGCCCCTCATTCGCTCTAGCCTTGGCTTTGGTGCGCGACGGTGGATCGCCGCGCTCCAACGCCAATCTGAGTGCCTTGCCATCCTCTCCACCCCAATAGACCATTCTGGGATATCAGCAAACGGGCGGCGGAGTATGGTGAAGCTAGCGCAGCGGATGACGGCAAATTTCTGTGCGGGGGTATGCACGTCGACGGTTTACAAATGGAACAAGCTAAACACGAGGAATAACAACGTTGGAGAAGATGTGAGAGTAATGACGAGGAAGAGCGTGGAGAATCCCGGGGAGCCGCCGGGGACGGTGTTGAGTGCAGCGACGTCGGTGTGGGTGGCGGCAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAAATGCTTCATATTCCCAAATCCCAACACCATCACCATCCCAATGCCGTCTCTCTCCTCCGTGCCACCCAGTCTCTAAATCCAAACCAGAGCAGCATGTTGATTCTGCAAGAGACTTGCACCGATGCATCGGGGTCGCTTGTAGTGTACGCGCCGGTTGACATTCCGGCGATGCAGGCGGTTATGAACGGCGGAGATTCAGCCTACGTGGCATTACTACCGTCAGGGTTCGCGGTGGTTCCGGCGGCGGAGGATGGTAGCGGAGGGAGCCTTTTGACGGTGGCGTTTCAGATATTGGTTAATAGTTTGCCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACAGTGAATAATTTGATTTCGTGTACGGTGCAAAAAATTAGAACGGCTCTCCGGTGTCACGAGCCTTCCACGTGA 2214 52.12 MSFLARFDSSDGDGNFMASGAIAQPHLVAQSSFTKSMFSSPSLSLALTNIDGLGTGEMVPADVRRRSREEEAAESRSGSENMDGGSGEEVEGGGGGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMRNPICSNCGGPAIIGEISVEEQQLRIENARLKDELDRVCALAGKFLGRVAVPVSPPLGSSSCLEEYGGGMMMMERCVYLEMGLAAMDEVVKMANGEEPLWVGEKLNEEEYLRMINGSCFGIKSINNGFVSEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQNAEGVWAVVDVSIDPITESSSSPPCRRLPSGCLIHEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSSLGFGARRWIAALQRQSECLAILSTPIDHSGISANGRRSMVKLAQRMTANFCAGVCTSTVYKWNKLNTRNNNVGEDVRVMTRKSVENPGEPPGTVLSAATSVWVAAAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHHHPNAVSLLRATQSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGSGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIRTALRCHEPST 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27152991 27160382 + Lsi05G020100.1 Lsi05g02010 664502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02010 737 SUPERFAMILY Bet v1-like 261 484 - -
Lsi05g02010 737 SUPERFAMILY Homeodomain-like 91 159 IPR009057 -
Lsi05g02010 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 258 731 IPR042160 -
Lsi05g02010 737 CDD START_ArGLABRA2_like 265 483 - -
Lsi05g02010 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 247 IPR042160 -
Lsi05g02010 737 MobiDBLite consensus disorder prediction 54 108 - -
Lsi05g02010 737 CDD homeodomain 106 159 IPR001356 GO:0003677
Lsi05g02010 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 54 247 - -
Lsi05g02010 737 Gene3D - 96 176 - -
Lsi05g02010 737 ProSiteProfiles START domain profile. 257 487 IPR002913 GO:0008289
Lsi05g02010 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 258 731 - -
Lsi05g02010 737 SMART START_1 266 484 IPR002913 GO:0008289
Lsi05g02010 737 Coils Coil 200 220 - -
Lsi05g02010 737 SMART HOX_1 100 163 IPR001356 GO:0003677
Lsi05g02010 737 SUPERFAMILY Bet v1-like 502 719 - -
Lsi05g02010 737 Pfam Homeodomain 102 157 IPR001356 GO:0003677
Lsi05g02010 737 Coils Coil 153 188 - -
Lsi05g02010 737 MobiDBLite consensus disorder prediction 61 77 - -
Lsi05g02010 737 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Lsi05g02010 737 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Lsi05g02010 737 Pfam START domain 269 483 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g02010 Lsi09g01939 CCT
Lsi05g02010 Lsi09g01939 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00276 Lsi-Chr5:3590233 Lsi05g02010 Lsi-Chr5:27152991 1.01E-166 dispersed
Lsi05g01050 Lsi-Chr5:18013631 Lsi05g02010 Lsi-Chr5:27152991 8.59E-08 dispersed
Lsi05g02010 Lsi-Chr5:27152991 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi10g01265 Lsi-Chr10:16918673 Lsi05g02010 Lsi-Chr5:27152991 1.04E-16 dispersed
Lsi05g01248 Lsi-Chr5:20287533 Lsi05g02010 Lsi-Chr5:27152991 0 wgd
Lsi05g02010 Lsi-Chr5:27152991 Lsi09g01939 Lsi-Chr9:28175003 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25424 PF01852 START 8.40E-46 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02010 K09338 - csv:101222248 919.457