Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02021 ATGGACTTATCTTGTAATACTTGGAAGCAAAATGTGTTATGTGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCACTGTGCTTAGAAATAGAATTTTTGATGCCAAGTTGACTGGCGGTTCAAGAGTAAGTTACAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCTTCTAGTAATTCCAATAATTTGAGTCTGGTTTGTGCAAGCAAGTTTGATGGAGCTTTGCAAATTTTTATGCACAAGAGATTCTTGAACTGGAACAATAAGATAAGTGGAAGAAGGATGGGAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAAATAATGGTGATGAAGGGTCCAATTCTGGGCCTACCGATGGTGTAGGGTCAGGTGGTTCCAGAGAAGTGGGTGGAGAAGCAGAAATGGTAGAAACGGATGTACCGACCGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGATCTGGAAGTTGCGAGACTTAACAGCACAATGTTTGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCATGCTTGGAATGATGTGAACTCTACTCTTGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGGTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGAAAAAGGAGGAAACGATTTTCCAGAAACGTCAATAGATAGCGAGGGGGCGATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAACTAGTGATGCGGAATTGAAGCGCTTACAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAAATATAATGATTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAATTCTTTTGTTGACACTTCGGAAATCAATCAGGGTTCAAATGTTATTGAAGAAGTTGAGAATGAGGATAACAAGGCAGCTCTAGAAATCTCTGGGGATCTTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGCGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAAGCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTCCAGACTCTGCGAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTCCACTAAAAAGCAATTACCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGACTTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACCAGCACCGATGAAGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGGGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACAAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTTCTGTTTAACATTGGCCTGGAGTTATCAGTTGAGAGGCTGAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGCGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTTATACCTTTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTAAAGGCAATAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCCGGGCTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACAGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTCGGTAGATTTTTTGGTATCTCAATCATATCTGCGTTAAGAGTTGGGTTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGTGGTCAGTTAATTGCTTCTCGGTTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCCGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCTAATGTTAAGACGTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGCGCTACTGCGGTAGTTCCCGAGACGTTGGAACCAAGCTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCATGTCGGAGATTGCTGCAACAATTAATGAGTTTAGGTCCCGACATTTATCCGAGCTTACCGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTGCTCGAATCATGAGTAAACCAAAAATTCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGA 3435 42.91 MDLSCNTWKQNVLCGSERTYCKTLDQFGPSTVLRNRIFDAKLTGGSRVSYKVPKKRNRIVASSNSNNLSLVCASKFDGALQIFMHKRFLNWNNKISGRRMGMVHLECQSNDSLAFIDGNGRNMEYVNNGDEGSNSGPTDGVGSGGSREVGGEAEMVETDVPTVDELRELLQKAMKDLEVARLNSTMFEEKAQKISEAAIALQDEATHAWNDVNSTLDSVQQIVNEEYAAKEGVQKATMALSLAEARLQVAIESLELEKGGNDFPETSIDSEGAIDGKEEQEVLLVAQEDIKECRANLETSDAELKRLQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMILAEQAVAFELEAAQRVSDAEIALQKVEKSLSNSFVDTSEINQGSNVIEEVENEDNKAALEISGDLAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQAYYLSDSENGKLSPDSAKEVESGAEKSILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDSTKKQLPKLIVGAVLLGAGIAIFANRAERTSQMIQQPDVVTTSTDEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFARIMSKPKIQTSDSSDENQVTEGTLAI 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27221054 27235057 - Lsi05G020210.1 Lsi05g02021 664513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02021 1144 Pfam Sodium/hydrogen exchanger family 588 958 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi05g02021 1144 ProSiteProfiles RCK N-terminal domain profile. 952 1070 IPR003148 GO:0006813
Lsi05g02021 1144 MobiDBLite consensus disorder prediction 126 141 - -
Lsi05g02021 1144 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1002 - -
Lsi05g02021 1144 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 589 869 IPR004771 GO:0006812|GO:0008324|GO:0016021
Lsi05g02021 1144 Coils Coil 163 183 - -
Lsi05g02021 1144 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1002 1144 - -
Lsi05g02021 1144 MobiDBLite consensus disorder prediction 446 492 - -
Lsi05g02021 1144 Gene3D - 1001 1108 - -
Lsi05g02021 1144 Coils Coil 290 338 - -
Lsi05g02021 1144 MobiDBLite consensus disorder prediction 125 150 - -
Lsi05g02021 1144 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1002 - -
Lsi05g02021 1144 Pfam TrkA-N domain 1001 1062 IPR003148 GO:0006813
Lsi05g02021 1144 Gene3D - 578 966 IPR038770 -
Lsi05g02021 1144 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1002 1144 - -
Lsi05g02021 1144 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 987 1087 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00654 Lsi-Chr3:8274147 Lsi05g02021 Lsi-Chr5:27221054 5.04E-55 dispersed
Lsi05g02021 Lsi-Chr5:27221054 Lsi06g00267 Lsi-Chr6:3011521 8.20E-37 dispersed
Lsi05g02021 Lsi-Chr5:27221054 Lsi08g01579 Lsi-Chr8:23818752 1.03E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02021 - - cmo:103483290 1927.14