Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g02021 | ATGGACTTATCTTGTAATACTTGGAAGCAAAATGTGTTATGTGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCACTGTGCTTAGAAATAGAATTTTTGATGCCAAGTTGACTGGCGGTTCAAGAGTAAGTTACAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCTTCTAGTAATTCCAATAATTTGAGTCTGGTTTGTGCAAGCAAGTTTGATGGAGCTTTGCAAATTTTTATGCACAAGAGATTCTTGAACTGGAACAATAAGATAAGTGGAAGAAGGATGGGAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAAATAATGGTGATGAAGGGTCCAATTCTGGGCCTACCGATGGTGTAGGGTCAGGTGGTTCCAGAGAAGTGGGTGGAGAAGCAGAAATGGTAGAAACGGATGTACCGACCGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGATCTGGAAGTTGCGAGACTTAACAGCACAATGTTTGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCATGCTTGGAATGATGTGAACTCTACTCTTGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGGTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGAAAAAGGAGGAAACGATTTTCCAGAAACGTCAATAGATAGCGAGGGGGCGATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAACTAGTGATGCGGAATTGAAGCGCTTACAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAAATATAATGATTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAATTCTTTTGTTGACACTTCGGAAATCAATCAGGGTTCAAATGTTATTGAAGAAGTTGAGAATGAGGATAACAAGGCAGCTCTAGAAATCTCTGGGGATCTTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGCGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAAGCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTCCAGACTCTGCGAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTCCACTAAAAAGCAATTACCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGACTTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACCAGCACCGATGAAGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGGGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACAAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTTCTGTTTAACATTGGCCTGGAGTTATCAGTTGAGAGGCTGAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGCGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTTATACCTTTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTAAAGGCAATAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCCGGGCTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACAGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTCGGTAGATTTTTTGGTATCTCAATCATATCTGCGTTAAGAGTTGGGTTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGTGGTCAGTTAATTGCTTCTCGGTTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCCGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCTAATGTTAAGACGTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGCGCTACTGCGGTAGTTCCCGAGACGTTGGAACCAAGCTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCATGTCGGAGATTGCTGCAACAATTAATGAGTTTAGGTCCCGACATTTATCCGAGCTTACCGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTGCTCGAATCATGAGTAAACCAAAAATTCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGA | 3435 | 42.91 | MDLSCNTWKQNVLCGSERTYCKTLDQFGPSTVLRNRIFDAKLTGGSRVSYKVPKKRNRIVASSNSNNLSLVCASKFDGALQIFMHKRFLNWNNKISGRRMGMVHLECQSNDSLAFIDGNGRNMEYVNNGDEGSNSGPTDGVGSGGSREVGGEAEMVETDVPTVDELRELLQKAMKDLEVARLNSTMFEEKAQKISEAAIALQDEATHAWNDVNSTLDSVQQIVNEEYAAKEGVQKATMALSLAEARLQVAIESLELEKGGNDFPETSIDSEGAIDGKEEQEVLLVAQEDIKECRANLETSDAELKRLQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMILAEQAVAFELEAAQRVSDAEIALQKVEKSLSNSFVDTSEINQGSNVIEEVENEDNKAALEISGDLAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQAYYLSDSENGKLSPDSAKEVESGAEKSILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDSTKKQLPKLIVGAVLLGAGIAIFANRAERTSQMIQQPDVVTTSTDEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFARIMSKPKIQTSDSSDENQVTEGTLAI | 1144 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27221054 | 27235057 | - | Lsi05G020210.1 | Lsi05g02021 | 664513 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g02021 | 1144 | Pfam | Sodium/hydrogen exchanger family | 588 | 958 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Lsi05g02021 | 1144 | ProSiteProfiles | RCK N-terminal domain profile. | 952 | 1070 | IPR003148 | GO:0006813 | |
Lsi05g02021 | 1144 | MobiDBLite | consensus disorder prediction | 126 | 141 | - | - | |
Lsi05g02021 | 1144 | PANTHER | K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED | 1 | 1002 | - | - | |
Lsi05g02021 | 1144 | TIGRFAM | 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family | 589 | 869 | IPR004771 | GO:0006812|GO:0008324|GO:0016021 | |
Lsi05g02021 | 1144 | Coils | Coil | 163 | 183 | - | - | |
Lsi05g02021 | 1144 | PANTHER | K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED | 1002 | 1144 | - | - | |
Lsi05g02021 | 1144 | MobiDBLite | consensus disorder prediction | 446 | 492 | - | - | |
Lsi05g02021 | 1144 | Gene3D | - | 1001 | 1108 | - | - | |
Lsi05g02021 | 1144 | Coils | Coil | 290 | 338 | - | - | |
Lsi05g02021 | 1144 | MobiDBLite | consensus disorder prediction | 125 | 150 | - | - | |
Lsi05g02021 | 1144 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 1 | 1002 | - | - | |
Lsi05g02021 | 1144 | Pfam | TrkA-N domain | 1001 | 1062 | IPR003148 | GO:0006813 | |
Lsi05g02021 | 1144 | Gene3D | - | 578 | 966 | IPR038770 | - | |
Lsi05g02021 | 1144 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 1002 | 1144 | - | - | |
Lsi05g02021 | 1144 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 987 | 1087 | IPR036291 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00654 | Lsi-Chr3:8274147 | Lsi05g02021 | Lsi-Chr5:27221054 | 5.04E-55 | dispersed | |
Lsi05g02021 | Lsi-Chr5:27221054 | Lsi06g00267 | Lsi-Chr6:3011521 | 8.20E-37 | dispersed | |
Lsi05g02021 | Lsi-Chr5:27221054 | Lsi08g01579 | Lsi-Chr8:23818752 | 1.03E-39 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g02021 | - | - | cmo:103483290 | 1927.14 |