Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02044 ATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTATAGAAGAGCCTGTGGGAGCTATTAGTGAAGATATAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGGTTTTCCTCCTCCATGTTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAACGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCATGCCGATAAGTTATGTGCTGAAGCTCAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGGATTAATAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTATGTGCGGTCACAGGCACCGGCTTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCATCATTTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAATTACCCACCGGAGATCTCAGTCACTGCCACTGGGACAGGTTAATAGCAGGGAAGTTGGAAGTCCTTCCAATCTACGTCCTAGAGGGAGATCATTGCTTGTCGACCATTTTAGAGGGCGCATACTAGATCCTTCTTGTCCAGATATTATGAATGGGGTTCATACTGCAAGAAACTTGGATGCTAACGAGCTTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTGCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATGGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGTGAAGCATTTCTAGAGGCAATTGCACGTAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTTAGAGCTGCAGAAGGGTTATATGCCGAAGAACTGAAACAGAGGAAGGAGGTTGAACAAGAGCTAGTGAAGGAAAAGGAAAAACTTGAAAGTATAAAGATACAACTAAATGAAGAGATGGAAGAGCTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACTGCAAAGGAATTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATTCAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAATAATCAATCCACCGGCCAATACCTTCCACAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACCTGCGTCATACTATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTGAACCTTCTCTCTTCATTTTTTGTTAATGTATTGAGTAAGATGAGGCATCCCAATCTTGTCACGCTCATTGGTGCCTGCCCTGAAGCTTGGGTTCTCATCTATGAATACCTCTGTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATTGCCACCGAGTTATGCTCGGCCCTTATGTTTCTTCATTCAAGTAAGCCCCACGGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAATGTTGAACAACGAAACACTTGTGTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCGGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTTGTGCAAGCCGAACAGCTCACTCGATTGGCATTGAGGTGTTGTGATATGAAGCGCAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGATGCTTGGACCAATGAGGGCTTCCTGTGGGGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCGCATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCGGATGGTTTTACGTATGAAGCAGAGGCTGTGAGAGGATGGCTAGACAGTGGACACAATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACAGAACTGA 2649 44.58 MAVVSAMLATTPRAGPINYAEASPIMISSSREIIEEPVGAISEDIICVAVGKDVKECLSVLRYALKSSGGKKVFLLHVHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVHADKLCAEAQCIEKGIVDMISLHGINKLVMGAAVDKCYSRRMVDLKSKKAIYVRSQAPAFCHIEFICKGNLICTREGRSDGAQVETIISSPQTSPDAESSEITHRRSQSLPLGQVNSREVGSPSNLRPRGRSLLVDHFRGRILDPSCPDIMNGVHTARNLDANELMGEWGLLTRRSPSERSDNCIRSPRGVIDMAPSPLSRVELCANGPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELVKEKEKLESIKIQLNEEMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRNNQSTGQYLPQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNLLSSFFVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHGIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQLTRLALRCCDMKRKSRPDLITDVWRMLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHNTSPMTNLRLEHRNLVPNRALRSAIQEWLQQN 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27399888 27405977 + Lsi05G020440.1 Lsi05g02044 664536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02044 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Lsi05g02044 882 CDD STK_N 48 198 - -
Lsi05g02044 882 CDD RING-Ubox_WDSUB1_like 816 857 - -
Lsi05g02044 882 SUPERFAMILY RING/U-box 807 882 - -
Lsi05g02044 882 ProSitePatterns Protein kinases ATP-binding region signature. 522 543 IPR017441 GO:0005524
Lsi05g02044 882 SUPERFAMILY Protein kinase-like (PK-like) 489 786 IPR011009 -
Lsi05g02044 882 MobiDBLite consensus disorder prediction 214 252 - -
Lsi05g02044 882 Coils Coil 386 490 - -
Lsi05g02044 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842|GO:0016567
Lsi05g02044 882 SMART Ubox_2 815 878 IPR003613 GO:0004842|GO:0016567
Lsi05g02044 882 Gene3D Phosphorylase Kinase; domain 1 501 596 - -
Lsi05g02044 882 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 878 - -
Lsi05g02044 882 Pfam U-box domain 813 882 IPR003613 GO:0004842|GO:0016567
Lsi05g02044 882 Pfam Protein kinase domain 521 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02044 882 PANTHER OS02G0152300 PROTEIN 41 878 - -
Lsi05g02044 882 ProSiteProfiles Protein kinase domain profile. 516 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02044 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 882 IPR013083 -
Lsi05g02044 882 Gene3D Transferase(Phosphotransferase) domain 1 597 796 - -
Lsi05g02044 882 SMART serkin_6 516 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02044 882 MobiDBLite consensus disorder prediction 214 258 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g02044 Lsi09g01569 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02044 Lsi-Chr5:27399888 Lsi11g00178 Lsi-Chr11:1853251 1.25E-105 dispersed
Lsi01g00816 Lsi-Chr1:6457124 Lsi05g02044 Lsi-Chr5:27399888 4.86E-83 transposed
Lsi10g01375 Lsi-Chr10:17894271 Lsi05g02044 Lsi-Chr5:27399888 5.90E-158 transposed
Lsi05g01216 Lsi-Chr5:20026351 Lsi05g02044 Lsi-Chr5:27399888 1.04E-09 wgd
Lsi05g02044 Lsi-Chr5:27399888 Lsi09g01569 Lsi-Chr9:23802565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83684 PF00069 Pkinase 3.00E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02044 - - csv:101211387 1554.65