Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g02052 | ATGTCACAAACAGATGATTTCGAGACATTCACTCCAACGACTGATGTCGAGCCTCTAAAGAGGGCCTGGTGTAATGAAAAGGCTGCTCCTGAAATTCTACCCTTTGAGGCATCTTTGGTTGGGAGAATCAAAGAGCAAATTCAATCGATGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTGATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGGTACAACCTGAATATTGTTTAATTTTGTTCAGAAACATCGAGATGCGCATTGAGAAGTACATGCTCTATATCTTGAAGTCAGATGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGTCGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAGGCAATCTATAACAAGTGAAGAGGATGACATGGTTCCAGAACCTCCACTGGACACGTTTGTGGTTTGCAAAAGTAAGGAATATCTTGAGCATATACAGCTTGAGGATGAGGAAGAGAGAGCGTCTAGTAGAATAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTATAG | 711 | 39.24 | MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27469151 | 27473392 | + | Lsi05G020520.1 | Lsi05g02052 | 664544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g02052 | 236 | SUPERFAMILY | GINS helical bundle-like | 11 | 161 | IPR036224 | - | |
| Lsi05g02052 | 236 | CDD | GINS_A_Sld5 | 15 | 149 | IPR038749 | - | |
| Lsi05g02052 | 236 | SUPERFAMILY | PriA/YqbF domain | 177 | 236 | - | - | |
| Lsi05g02052 | 236 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 175 | 236 | IPR031633 | - | |
| Lsi05g02052 | 236 | Gene3D | - | 2 | 226 | - | - | |
| Lsi05g02052 | 236 | PANTHER | SLD5 PROTEIN | 1 | 236 | IPR008591 | GO:0006261 | |
| Lsi05g02052 | 236 | Coils | Coil | 40 | 60 | - | - | |
| Lsi05g02052 | 236 | PIRSF | GINS_Sld5 | 1 | 236 | IPR008591 | GO:0006261 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g02052 | K10735 | - | csv:101210888 | 407.142 |