Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02054 ATGAATATGACGTTAGCAGGATTTGCTTCAATGGCTGGCAGAAGGATTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTGCACAAAGATTTCCGAATTCGTTGACCGGGTTATTAGACCGAGTGTTGTTCTAAATAGAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGTATGTCGTTTACATATCCCAAGTTATGGTACACATCGCACTGACACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGCAATCTGTCAAATTCTCGATTTTATTCATCGGCTTCTGGTAGGAAAGTTGATATAACTGGAGATACTAGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCTGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTGTCGGATGAATTATCTCCGCATGTAGATAAACTCTTTGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCTATACTATCCGGACACATACCTAGCGAGGAAATTCCATATGAGAAAGGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCCCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCGGAGTTTGTTTCACAGGCATGGAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTCTTGCAAAGCTTGACCGGGATAGGTTACTTACCATTGACAAAGTTTCATCTGTTGGCCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCCATGTTGACGGTTGGTGGTATTGGAGGTGAGAGCTTGGTGCCAAATGACTTTGCAAGATATGCTCAAGATAAAAATCATGTTCTTGGAGTGGCCACTGCTTTTGCTGCGAGGGACGTACTTGGGAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCTTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGTTATTAAGTACTGAAAAATTTCCAATCATTGTTCCAAATTCTCTGTTTTCTAGCCAGGTGGACCCTTTTTTCTTTCTATCCTTCAATATTTATTGTTCTTGGCCTTTATTTTTATTCCTATATTATTACCGTACCTTCACTTGGTCACCCAACATACTGGGCTATATGCTTCCCTTTAGAGGAGATTTGAAGGGTATTGGCTTTCTATTTGAAATTCAAGTTTGGATTGATTATTCTCTCAAGGGATTGCTCATTTGGTCCCATATTCTTCAACCCGTTTCAATTAACATGTTGAAGACTGTAATTATAAATAAGTCCCGAGCACAGTGGCGTGCAATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTAAAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTCATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGTTCCTTATTGTTTTCTCTCTCAAATTGAAAGTTCATATGCAGAATTGACATTCGGTTGTAACCTTAAAAAAATGGGTAAAGAAGAATTGTTTGCTACGGAGCAAGATATTCTCCTTGAGTCAGTACAGATCATTAGGGAGAACGGTGCAACCTTAGGTAATACCGTGTCAGATTGGACGAACAAGTGA 1899 41.18 MNMTLAGFASMAGRRIAACSFQSFKPCTKISEFVDRVIRPSVVLNRRYYKDESHSLKSASVCRLHIPSYGTHRTDTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTSVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGHIPSEEIPYEKGFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQAWRGAVILSLVWFIYRWKTNVLSRALATQTLAKLDRDRLLTIDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGESLVPNDFARYAQDKNHVLGVATAFAARDVLGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSTEKFPIIVPNSLFSSQVDPFFFLSFNIYCSWPLFLFLYYYRTFTWSPNILGYMLPFRGDLKGIGFLFEIQVWIDYSLKGLLIWSHILQPVSINMLKTVIINKSRAQWRAITKKIPLQVDDFSKVSQISDGIKNMLMSHPKVFLGKEVPYCFLSQIESSYAELTFGCNLKKMGKEELFATEQDILLESVQIIRENGATLGNTVSDWTNK 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27482160 27486049 + Lsi05G020540.1 Lsi05g02054 664546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02054 632 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 79 628 - -
Lsi05g02054 632 SUPERFAMILY Sm-like ribonucleoproteins 380 440 IPR010920 -
Lsi05g02054 632 Gene3D - 273 354 - -
Lsi05g02054 632 Gene3D - 396 441 IPR023408 -
Lsi05g02054 632 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 275 351 IPR011014 GO:0016020
Lsi05g02054 632 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 79 628 - -
Lsi05g02054 632 Pfam Mechanosensitive ion channel 369 439 IPR006685 GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02054 K22047 - csv:101220483 707.597