Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02054 ATGAATATGACGTTAGCAGGATTTGCTTCAATGGCTGGCAGAAGGATTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTGCACAAAGATTTCCGAATTCGTTGACCGGGTTATTAGACCGAGTGTTGTTCTAAATAGAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGTATGTCGTTTACATATCCCAAGTTATGGTACACATCGCACTGACACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGCAATCTGTCAAATTCTCGATTTTATTCATCGGCTTCTGGTAGGAAAGTTGATATAACTGGAGATACTAGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCTGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTGTCGGATGAATTATCTCCGCATGTAGATAAACTCTTTGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCTATACTATCCGGACACATACCTAGCGAGGAAATTCCATATGAGAAAGGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCCCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCGGAGTTTGTTTCACAGGCATGGAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTCTTGCAAAGCTTGACCGGGATAGGTTACTTACCATTGACAAAGTTTCATCTGTTGGCCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCCATGTTGACGGTTGGTGGTATTGGAGGTGAGAGCTTGGTGCCAAATGACTTTGCAAGATATGCTCAAGATAAAAATCATGTTCTTGGAGTGGCCACTGCTTTTGCTGCGAGGGACGTACTTGGGAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCTTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGTTATTAAGTACTGAAAAATTTCCAATCATTGTTCCAAATTCTCTGTTTTCTAGCCAGGTGGACCCTTTTTTCTTTCTATCCTTCAATATTTATTGTTCTTGGCCTTTATTTTTATTCCTATATTATTACCGTACCTTCACTTGGTCACCCAACATACTGGGCTATATGCTTCCCTTTAGAGGAGATTTGAAGGGTATTGGCTTTCTATTTGAAATTCAAGTTTGGATTGATTATTCTCTCAAGGGATTGCTCATTTGGTCCCATATTCTTCAACCCGTTTCAATTAACATGTTGAAGACTGTAATTATAAATAAGTCCCGAGCACAGTGGCGTGCAATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTAAAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTCATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGTTCCTTATTGTTTTCTCTCTCAAATTGAAAGTTCATATGCAGAATTGACATTCGGTTGTAACCTTAAAAAAATGGGTAAAGAAGAATTGTTTGCTACGGAGCAAGATATTCTCCTTGAGTCAGTACAGATCATTAGGGAGAACGGTGCAACCTTAGGTAATACCGTGTCAGATTGGACGAACAAGTGA 1899 41.18 MNMTLAGFASMAGRRIAACSFQSFKPCTKISEFVDRVIRPSVVLNRRYYKDESHSLKSASVCRLHIPSYGTHRTDTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTSVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGHIPSEEIPYEKGFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQAWRGAVILSLVWFIYRWKTNVLSRALATQTLAKLDRDRLLTIDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGESLVPNDFARYAQDKNHVLGVATAFAARDVLGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSTEKFPIIVPNSLFSSQVDPFFFLSFNIYCSWPLFLFLYYYRTFTWSPNILGYMLPFRGDLKGIGFLFEIQVWIDYSLKGLLIWSHILQPVSINMLKTVIINKSRAQWRAITKKIPLQVDDFSKVSQISDGIKNMLMSHPKVFLGKEVPYCFLSQIESSYAELTFGCNLKKMGKEELFATEQDILLESVQIIRENGATLGNTVSDWTNK 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27482160 27486049 + Lsi05G020540.1 Lsi05g02054 664546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02054 632 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 79 628 - -
Lsi05g02054 632 SUPERFAMILY Sm-like ribonucleoproteins 380 440 IPR010920 -
Lsi05g02054 632 Gene3D - 273 354 - -
Lsi05g02054 632 Gene3D - 396 441 IPR023408 -
Lsi05g02054 632 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 275 351 IPR011014 GO:0016020
Lsi05g02054 632 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 79 628 - -
Lsi05g02054 632 Pfam Mechanosensitive ion channel 369 439 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02054 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 707.597
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g02054 . 139 631 Mechanosensitive Ion Channel Family AT4G00290 52.7 8.1e-137 484.2
Lsi05g00779 . 67 732 Mechanosensitive Ion Channel Family AT5G10490 50.9 1.8e-163 573.2
Lsi08g01024 . 10 643 Mechanosensitive Ion Channel Family AT1G58200 50.9 3.1e-163 572.4
Lsi05g00779 . 43 510 Mechanosensitive Ion Channel Family AT1G58200 56.7 1.7e-145 513.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G53470 53.5 8.5e-254 873.6
Lsi10g00812 CCT 16 770 Mechanosensitive Ion Channel Family AT1G53470 51.2 3.2e-213 738.8
Lsi10g00810 . 43 961 Mechanosensitive Ion Channel Family AT3G14810 51.5 8.4e-243 837.0
Lsi10g00812 CCT 17 770 Mechanosensitive Ion Channel Family AT3G14810 51.5 1.6e-209 726.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.7e-275 945.7
Lsi10g00812 CCT 15 770 Mechanosensitive Ion Channel Family AT1G78610 55.5 1.3e-235 813.1
Lsi10g00810 . 226 963 Mechanosensitive Ion Channel Family AT2G17000 58.4 3.7e-230 795.0
Lsi10g00812 CCT 167 769 Mechanosensitive Ion Channel Family AT2G17000 60.2 5.0e-203 704.9
Lsi11g01224 CCT 264 1022 Mechanosensitive Ion Channel Family AT2G17000 50.3 8.5e-203 704.1
Lsi10g00810 . 1 676 Mechanosensitive Ion Channel Family AT2G17010 50.6 1.2e-162 570.5
Lsi10g00812 CCT 147 536 Mechanosensitive Ion Channel Family AT2G17010 61.2 5.8e-138 488.4
Lsi04g01392 . 72 742 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.4e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33