Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02069 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGCGCCCTCCGCTGCCACCATTATTCCTTCTTCTTCTTCTTCTGTTTCTTCGTCTTCCAATAACTCTATCCCTTTTTCTTTTGGTAGAGACCTAACCAACCAAACAAAAAACCATTTCTTTTCCCTTCAAGATCCATTTCAACCCCCTAATTGTAATTCCACTGAGGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCTCAACCCTCTCCTCCGCCGCTGCCTCCATCGCCTGCTCTGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCAGAAGCAACAACAGAGCACCCATCTCCCCAAACAGCTCCATTCAGCCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGCTGAAGAAAGTCTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGCTCCACCCGTCAGAAACCCATCACACCTACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAGCAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAAGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAACTCGACAGCCCAATGACCGACGACTGCTTTTCTGATCAGTTTCCGGCGAATTTCGACCTTCCATGGTTGTTTAACGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 993 49.85 MEVDWDLHAVVRGYSAAPSAATIIPSSSSSVSSSSNNSIPFSFGRDLTNQTKNHFFSLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPLPPSPALPLLSSPAAKILTHQKQQQSTHLPKQLHSAPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPMTDDCFSDQFPANFDLPWLFNGNPDSEIVKLPC 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27610451 27611719 + Lsi05G020690.1 Lsi05g02069 664561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02069 330 ProSiteProfiles WRKY domain profile. 147 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g02069 330 MobiDBLite consensus disorder prediction 106 123 - -
Lsi05g02069 330 SUPERFAMILY WRKY DNA-binding domain 150 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g02069 330 MobiDBLite consensus disorder prediction 82 99 - -
Lsi05g02069 330 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 311 IPR044810 GO:0003700
Lsi05g02069 330 SMART WRKY_cls 152 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g02069 330 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 311 - -
Lsi05g02069 330 MobiDBLite consensus disorder prediction 79 144 - -
Lsi05g02069 330 MobiDBLite consensus disorder prediction 210 238 - -
Lsi05g02069 330 MobiDBLite consensus disorder prediction 207 275 - -
Lsi05g02069 330 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g02069 330 Gene3D WRKY domain 136 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00051 Lsi-Chr1:614237 Lsi05g02069 Lsi-Chr5:27610451 1.31E-06 dispersed
Lsi02g00829 Lsi-Chr2:7734065 Lsi05g02069 Lsi-Chr5:27610451 1.97E-32 dispersed
Lsi02g00995 Lsi-Chr2:10058690 Lsi05g02069 Lsi-Chr5:27610451 2.01E-45 dispersed
Lsi05g02069 Lsi-Chr5:27610451 Lsi06g01220 Lsi-Chr6:22581595 1.48E-32 dispersed
Lsi03g01116 Lsi-Chr3:21344473 Lsi05g02069 Lsi-Chr5:27610451 1.68E-32 transposed
Lsi07g00904 Lsi-Chr7:10405264 Lsi05g02069 Lsi-Chr5:27610451 1.38E-46 transposed
Lsi05g02069 Lsi-Chr5:27610451 Lsi09g00076 Lsi-Chr9:633526 2.74E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25431 PF03106 WRKY 4.40E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02069 K13425 - csv:101217082 491.886