Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02094 ATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACGCTGGATCAGAACAGTGTGCCGAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTGCAGGTCATGCTCCTCACCCTTATATGTGGGGTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCAGCAGTTTCTATGGGACCACATTCGCATGGCCCTGGTGTTCCCTCTTCACCCGCGGCTGCAACTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTAGCGCTGAGAGTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAACGAAGCCGTGAGGGAACACCTACTATTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAACTCTAGCAAGTTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGCGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGGAATCCTTCCAGTATGAACCCCATGACAAGTCCAACGACCGTTCCGCCTTGTTCGGTATTGCCTTCTGAAGTCTGGCTCCAGAGTGAAAAAGAACTAAAACGGGAAAGGAGAAAACAGTCAAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAAGAGCTAGCTCGTAAAGTTGATTCGCTGACTGCAGAGAATGTCGCTATTCGATCTGAAATAAGTAGATTGTCAGAGAATTCTGAGAAACTTAAGAAAGAAAACTCTACATTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACTGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAATCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGCCAGCTCTTGGACACGAGTCCAAGGGCCGATGCAGTCGCTGCTAGCTAA 1254 46.01 MGTSEEAKSVKTEKPSSPTLDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVAAGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAAATPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSAESAEGGAEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTIGKDAKIEPQASPVTAAEMNENSSKLLGTTKAANATGKLGSAISPGMSTALELRNPSSMNPMTSPTTVPPCSVLPSEVWLQSEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTEIKGPVNKSINEESIICKKNSSSGAKLRQLLDTSPRADAVAAS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27788450 27794812 - Lsi05G020940.1 Lsi05g02094 664586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02094 417 SMART brlzneu 281 345 IPR004827 GO:0003700|GO:0006355
Lsi05g02094 417 MobiDBLite consensus disorder prediction 115 133 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 279 316 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 166 186 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 13 28 - -
Lsi05g02094 417 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700|GO:0006355
Lsi05g02094 417 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 1 28 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 395 417 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 101 133 - -
Lsi05g02094 417 Pfam Disordered region downstream of MFMR 132 263 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 331 347 - -
Lsi05g02094 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700|GO:0006355
Lsi05g02094 417 PANTHER G-BOX-BINDING FACTOR 3 1 417 - -
Lsi05g02094 417 MobiDBLite consensus disorder prediction 213 269 - -
Lsi05g02094 417 Gene3D - 284 337 - -
Lsi05g02094 417 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700|GO:0006355
Lsi05g02094 417 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 417 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lsi05g02094 417 SUPERFAMILY Leucine zipper domain 284 340 IPR046347 GO:0003700|GO:0006355
Lsi05g02094 417 MobiDBLite consensus disorder prediction 154 380 - -
Lsi05g02094 417 Coils Coil 301 356 - -
Lsi05g02094 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00696 Lsi-Chr1:5555083 Lsi05g02094 Lsi-Chr5:27788450 8.55E-51 dispersed
Lsi05g02094 Lsi-Chr5:27788450 Lsi03g00198 Lsi-Chr3:2596363 1.77E-08 dispersed
Lsi07g01159 Lsi-Chr7:17052474 Lsi05g02094 Lsi-Chr5:27788450 3.14E-06 dispersed
Lsi05g02094 Lsi-Chr5:27788450 Lsi04g00324 Lsi-Chr4:3309103 4.04E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25434 PF16596 MFMR_assoc 1.20E-20 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02094 K09060 - csv:101213720 733.021