Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02130 ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACCCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTGGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGAGAGGAAACAGAATCTACCCAGATTCTTAGTCTCCAGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGAGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCGGGAAACATATCTGGCTTTCGGATGTGCTCAATTTGCCATCTGAGTATTGCGTGAGATCATACCTAGCGAAATCTGCAGGAATTAGGACCATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGTTGATCAGATCATTGTTTTCATCCCAAATTTCACTCGACAGAGTCAGGCCGTCAGCAGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGAGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAGCTTGGCGCATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTCAATGGAGTCAGAGATGAATTTTGCCTCAGTCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCTGTAGCAACATCAAGGCCTTCTGTGATTAACCGCGTAGGAGCAGATTCGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAAGGGCCTGGCACTGATGAAAGACGACCTCGCAAACGAGGTAGAAAGCCTGCAAATGGCAGGGAGGAGCCACTAAATCACGTTGAGGCAGAGAGGCAGCGCCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGATAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATTAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCAGCCTCACCTCAAGTGAGGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGATCAATTCCTTGATGTCAACATTGACGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCAATAGAGTCCCACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAATTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTGATAGCCGCATTTTCCCGGGACTCCACTTCGTTACATCCTCTATCAACAGTTGGGTAG 1857 46.15 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETESTQILSLQLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHIWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQISLDRVRPSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDEFCLSPYQSQKLAQMQIDFSVATSRPSVINRVGADSEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSSLTSSEATPSEGNPEIENKDQFLDVNIDVEAAHDEVIVKVSCPIESHPASRVIKAMKDAQINVVDSKFSEANDKVLHTFVIKSPGSEQLTKEQLIAAFSRDSTSLHPLSTVG 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28132824 28134680 - Lsi05G021300.1 Lsi05g02130 664622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02130 618 PANTHER MYC 13 612 IPR045084 GO:0003700|GO:0006355
Lsi05g02130 618 MobiDBLite consensus disorder prediction 406 454 - -
Lsi05g02130 618 MobiDBLite consensus disorder prediction 409 454 - -
Lsi05g02130 618 Gene3D - 436 508 IPR036638 GO:0046983
Lsi05g02130 618 MobiDBLite consensus disorder prediction 502 523 - -
Lsi05g02130 618 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983
Lsi05g02130 618 PANTHER TRANSCRIPTION FACTOR MTB1 13 612 - -
Lsi05g02130 618 Coils Coil 489 509 - -
Lsi05g02130 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 506 IPR036638 GO:0046983
Lsi05g02130 618 SMART finulus 449 498 IPR011598 GO:0046983
Lsi05g02130 618 CDD bHLH_AtAIB_like 440 513 - -
Lsi05g02130 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Lsi05g02130 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00644 Lsi-Chr3:8103519 Lsi05g02130 Lsi-Chr5:28132824 3.87E-18 dispersed
Lsi05g00991 Lsi-Chr5:17343187 Lsi05g02130 Lsi-Chr5:28132824 6.48E-90 dispersed
Lsi05g02130 Lsi-Chr5:28132824 Lsi07g01198 Lsi-Chr7:17487021 1.00E-25 dispersed
Lsi11g01209 Lsi-Chr11:20620419 Lsi05g02130 Lsi-Chr5:28132824 3.60E-13 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25438 PF14215 bHLH-MYC_N 1.10E-54 CL0161 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02130 - - csv:101208845 1152.12