Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02172 ATGATTTTTGGGTGGTGGAGAATGAACGTCAAAACTCCGGCCACCAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGAGAGGGAACTTTTGCTAAGGTTAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGACCGCGAAAAAGTTCTCCGCCACAAGATGGTCGAACAGATTAAAAGAGAGATTTCCACTCTGAAAGTGATCAAGCATCCGAATGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAACTTATTAATGCTGTAGATTACTGTCACAGTAGAGGTGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTACGAGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGAGTCATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTATAGAAAAATTTCGAATGCTGATTTTTCCTTTCCAACATGGTTCTCAAATGGTGCGAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTACTCGAATAACGATAGCCGAGATTCAAGAAGATCCATGGTTCAAGAAGGGCTACACACCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCAAAGGTGAGAATTTTATCACAAAACAATGTCTTTGAGCCACAGATTAATCCCGTGTCCATGAATGCTTTCGAGCTTATCTCCAGGTCACCTGGTTTTAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAAGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTGTTTGAGGTGGCTCCTTCCTTGCACATGGTTGAGCTTCGGAAAACAGGGGGTGATACGCTCGAGTTTCATAAGGCATGTCATCAATTCATCATTCCAAAGCAAAATTGTACAAATGCTGTATATACTAATGTGCTTTTGCATTTGCACATGACAGTTCTACAAAAGTTTCTCGTCAGGATTAAAAGACATAATGTGGAGAACTGA 1347 41.95 MIFGWWRMNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHKMVEQIKREISTLKVIKHPNVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPTWFSNGARKLVCRILDPDPITRITIAEIQEDPWFKKGYTPAHFEVEEDITLDDVDAAFSSSKVRILSQNNVFEPQINPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACHQFIIPKQNCTNAVYTNVLLHLHMTVLQKFLVRIKRHNVEN 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28393444 28399541 + Lsi05G021720.1 Lsi05g02172 664664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02172 448 Pfam NAF domain 297 357 IPR004041 GO:0007165
Lsi05g02172 448 SUPERFAMILY Protein kinase-like (PK-like) 19 298 IPR011009 -
Lsi05g02172 448 ProSiteProfiles Protein kinase domain profile. 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02172 448 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 14 407 - -
Lsi05g02172 448 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Lsi05g02172 448 PANTHER - 14 407 - -
Lsi05g02172 448 Pfam Protein kinase domain 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02172 448 Gene3D Phosphorylase Kinase; domain 1 11 95 - -
Lsi05g02172 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lsi05g02172 448 CDD CIPK_C 301 413 - -
Lsi05g02172 448 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Lsi05g02172 448 Gene3D Kinase associated domain 1, KA1 295 415 - -
Lsi05g02172 448 SMART serkin_6 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02172 448 Gene3D Transferase(Phosphotransferase) domain 1 96 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00124 Lsi-Chr1:1284522 Lsi05g02172 Lsi-Chr5:28393444 6.39E-178 dispersed
Lsi05g02172 Lsi-Chr5:28393444 Lsi02g00815 Lsi-Chr2:7601919 1.14E-141 dispersed
Lsi05g02172 Lsi-Chr5:28393444 Lsi02g00916 Lsi-Chr2:8801729 2.67E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83690 PF00069 Pkinase 4.10E-52 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02172 - - csv:101203531 709.523