Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g02181 | ATGGATATAACCAATTTGCCTCGTGATGTGGAGCTGTCAAGGAGGGGTAGAACCATTGGGCCCCATTCCCTTCTGGGTCCCACTGCACGTGATTTGGATGTTTCATTCTTGGAGGAAGAACTGAGAATGGGCGGGAGAGATGACGAGTTGGGACTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCAGAGGCCGTCGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACACCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTGCCGACGGGCGTGGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCGGCCGGAGACGAGGCGGAGGCGGAGGCTGAGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAAGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCAATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAATTGAAACAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAAGTACAAGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACCACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGACCTCGGCTGCTACGATCACACGCCATCCAGCAGCAGCTGGTGTGCAGCGTCCCTCGATGGCCATCAATCCGTGGGCGGTGGTGCCGATCCAACACACGGCGTTTTCAGGATATGCAACATCAAGAGCTTTCATAACTCAAATCAAGCAAGTTCAGCGCTACTGCTCATGTCATAGTTTCAATCACAGCAGGCGAAAGATTCTCCTATTTTTCTTATCAACTACAGCTTTATTTCCAGCTCGGCATTCTTCTGCCAAGACAAAGAGTAAGAATCCATATGATGAAAGACGCTTACTAGAGCAAAACAAACGAAGACAAAGAGAAAACAATGCACCTGATGACTTTCCAAGCTTTGTCAGAGAAGGTATGGATCATGCTGCTATTCCATGGCTCTATCAGGGTTTCGAGGTTAAGGTAATAGCACCCGAGACCTATGTTAAACGTGACTCTGGGCTCATATATTGGGATATCGAAGTTGGTAATGGTGATTGCCCCAAGGATGGTCAGCAGGTGATCTTTCACTATGTCGGCTACAATGAGTCTGGGCGTCGAATTGACAGCACATACTTACAGGGTTCTCCCGCCAGAATCCGTGTGGGCACTAATGCATTGGTCCCAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCTGTGGGGCCTTCCACATTTTTCAGCTCAAAGCAGTTTGAAGTCTTTGATGTGGAACTGTTAAGCGTCCAGGATTGTCAGAGGAGGACAATAGCCTTTTACTCTGATATTGTTTGCAACTAG | 1725 | 49.1 | MDITNLPRDVELSRRGRTIGPHSLLGPTARDLDVSFLEEELRMGGRDDELGLSLSLGFGVTTQPSFQPTHMQRPSNNSMHNHLRKSSWNELFQFSDRNTDSRSFLRGIDVNRLPTGVDGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAATITRHPAAAGVQRPSMAINPWAVVPIQHTAFSGYATSRAFITQIKQVQRYCSCHSFNHSRRKILLFFLSTTALFPARHSSAKTKSKNPYDERRLLEQNKRRQRENNAPDDFPSFVREGMDHAAIPWLYQGFEVKVIAPETYVKRDSGLIYWDIEVGNGDCPKDGQQVIFHYVGYNESGRRIDSTYLQGSPARIRVGTNALVPGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFYSDIVCN | 574 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28450834 | 28461695 | - | Lsi05G021810.1 | Lsi05g02181 | 664673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g02181 | 574 | CDD | homeodomain | 182 | 239 | IPR001356 | GO:0003677 | |
Lsi05g02181 | 574 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 471 | 558 | IPR001179 | GO:0003755 | |
Lsi05g02181 | 574 | SUPERFAMILY | FKBP-like | 388 | 558 | - | - | |
Lsi05g02181 | 574 | PANTHER | - | 45 | 334 | - | - | |
Lsi05g02181 | 574 | MobiDBLite | consensus disorder prediction | 386 | 419 | - | - | |
Lsi05g02181 | 574 | Gene3D | - | 437 | 565 | IPR046357 | GO:0003755 | |
Lsi05g02181 | 574 | ProSiteProfiles | 'Homeobox' domain profile. | 178 | 238 | IPR001356 | GO:0003677 | |
Lsi05g02181 | 574 | SMART | halz | 238 | 281 | IPR003106 | GO:0006355|GO:0043565 | |
Lsi05g02181 | 574 | MobiDBLite | consensus disorder prediction | 390 | 414 | - | - | |
Lsi05g02181 | 574 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 468 | 533 | IPR001179 | GO:0003755 | |
Lsi05g02181 | 574 | Pfam | Homeodomain | 182 | 236 | IPR001356 | GO:0003677 | |
Lsi05g02181 | 574 | MobiDBLite | consensus disorder prediction | 112 | 183 | - | - | |
Lsi05g02181 | 574 | SMART | HOX_1 | 180 | 242 | IPR001356 | GO:0003677 | |
Lsi05g02181 | 574 | Coils | Coil | 244 | 274 | - | - | |
Lsi05g02181 | 574 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
Lsi05g02181 | 574 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 45 | 334 | - | - | |
Lsi05g02181 | 574 | SUPERFAMILY | Homeodomain-like | 168 | 239 | IPR009057 | - | |
Lsi05g02181 | 574 | Pfam | Homeobox associated leucine zipper | 238 | 272 | IPR003106 | GO:0006355|GO:0043565 | |
Lsi05g02181 | 574 | MobiDBLite | consensus disorder prediction | 122 | 138 | - | - | |
Lsi05g02181 | 574 | Pfam | HD-ZIP protein N terminus | 43 | 143 | IPR006712 | GO:0005634 | |
Lsi05g02181 | 574 | Gene3D | - | 175 | 243 | - | - | |
Lsi05g02181 | 574 | ProSitePatterns | 'Homeobox' domain signature. | 213 | 236 | IPR017970 | GO:0000981|GO:0006355 | |
Lsi05g02181 | 574 | CDD | bZIP | 231 | 270 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01165 | Lsi-Chr4:16901349 | Lsi05g02181 | Lsi-Chr5:28450834 | 1.31E-30 | dispersed | |
Lsi05g02181 | Lsi-Chr5:28450834 | Lsi07g01279 | Lsi-Chr7:18633125 | 2.57E-108 | dispersed | |
Lsi07g00391 | Lsi-Chr7:4184913 | Lsi05g02181 | Lsi-Chr5:28450834 | 3.22E-10 | dispersed | |
Lsi09g00640 | Lsi-Chr9:7091257 | Lsi05g02181 | Lsi-Chr5:28450834 | 1.13E-10 | dispersed | |
Lsi05g02181 | Lsi-Chr5:28450834 | Lsi03g01746 | Lsi-Chr3:28845899 | 1.42E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25441 | PF04618 | HD-ZIP_N | 1.30E-30 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g02181 | - | K09338 | csv:101222132 | 452.21 |