Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02181 ATGGATATAACCAATTTGCCTCGTGATGTGGAGCTGTCAAGGAGGGGTAGAACCATTGGGCCCCATTCCCTTCTGGGTCCCACTGCACGTGATTTGGATGTTTCATTCTTGGAGGAAGAACTGAGAATGGGCGGGAGAGATGACGAGTTGGGACTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCAGAGGCCGTCGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACACCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTGCCGACGGGCGTGGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCGGCCGGAGACGAGGCGGAGGCGGAGGCTGAGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAAGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCAATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAATTGAAACAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAAGTACAAGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACCACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGACCTCGGCTGCTACGATCACACGCCATCCAGCAGCAGCTGGTGTGCAGCGTCCCTCGATGGCCATCAATCCGTGGGCGGTGGTGCCGATCCAACACACGGCGTTTTCAGGATATGCAACATCAAGAGCTTTCATAACTCAAATCAAGCAAGTTCAGCGCTACTGCTCATGTCATAGTTTCAATCACAGCAGGCGAAAGATTCTCCTATTTTTCTTATCAACTACAGCTTTATTTCCAGCTCGGCATTCTTCTGCCAAGACAAAGAGTAAGAATCCATATGATGAAAGACGCTTACTAGAGCAAAACAAACGAAGACAAAGAGAAAACAATGCACCTGATGACTTTCCAAGCTTTGTCAGAGAAGGTATGGATCATGCTGCTATTCCATGGCTCTATCAGGGTTTCGAGGTTAAGGTAATAGCACCCGAGACCTATGTTAAACGTGACTCTGGGCTCATATATTGGGATATCGAAGTTGGTAATGGTGATTGCCCCAAGGATGGTCAGCAGGTGATCTTTCACTATGTCGGCTACAATGAGTCTGGGCGTCGAATTGACAGCACATACTTACAGGGTTCTCCCGCCAGAATCCGTGTGGGCACTAATGCATTGGTCCCAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCTGTGGGGCCTTCCACATTTTTCAGCTCAAAGCAGTTTGAAGTCTTTGATGTGGAACTGTTAAGCGTCCAGGATTGTCAGAGGAGGACAATAGCCTTTTACTCTGATATTGTTTGCAACTAG 1725 49.1 MDITNLPRDVELSRRGRTIGPHSLLGPTARDLDVSFLEEELRMGGRDDELGLSLSLGFGVTTQPSFQPTHMQRPSNNSMHNHLRKSSWNELFQFSDRNTDSRSFLRGIDVNRLPTGVDGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAATITRHPAAAGVQRPSMAINPWAVVPIQHTAFSGYATSRAFITQIKQVQRYCSCHSFNHSRRKILLFFLSTTALFPARHSSAKTKSKNPYDERRLLEQNKRRQRENNAPDDFPSFVREGMDHAAIPWLYQGFEVKVIAPETYVKRDSGLIYWDIEVGNGDCPKDGQQVIFHYVGYNESGRRIDSTYLQGSPARIRVGTNALVPGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFYSDIVCN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28450834 28461695 - Lsi05G021810.1 Lsi05g02181 664673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02181 574 CDD homeodomain 182 239 IPR001356 GO:0003677
Lsi05g02181 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 471 558 IPR001179 GO:0003755
Lsi05g02181 574 SUPERFAMILY FKBP-like 388 558 - -
Lsi05g02181 574 PANTHER - 45 334 - -
Lsi05g02181 574 MobiDBLite consensus disorder prediction 386 419 - -
Lsi05g02181 574 Gene3D - 437 565 IPR046357 GO:0003755
Lsi05g02181 574 ProSiteProfiles 'Homeobox' domain profile. 178 238 IPR001356 GO:0003677
Lsi05g02181 574 SMART halz 238 281 IPR003106 GO:0006355|GO:0043565
Lsi05g02181 574 MobiDBLite consensus disorder prediction 390 414 - -
Lsi05g02181 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 468 533 IPR001179 GO:0003755
Lsi05g02181 574 Pfam Homeodomain 182 236 IPR001356 GO:0003677
Lsi05g02181 574 MobiDBLite consensus disorder prediction 112 183 - -
Lsi05g02181 574 SMART HOX_1 180 242 IPR001356 GO:0003677
Lsi05g02181 574 Coils Coil 244 274 - -
Lsi05g02181 574 MobiDBLite consensus disorder prediction 156 183 - -
Lsi05g02181 574 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 45 334 - -
Lsi05g02181 574 SUPERFAMILY Homeodomain-like 168 239 IPR009057 -
Lsi05g02181 574 Pfam Homeobox associated leucine zipper 238 272 IPR003106 GO:0006355|GO:0043565
Lsi05g02181 574 MobiDBLite consensus disorder prediction 122 138 - -
Lsi05g02181 574 Pfam HD-ZIP protein N terminus 43 143 IPR006712 GO:0005634
Lsi05g02181 574 Gene3D - 175 243 - -
Lsi05g02181 574 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Lsi05g02181 574 CDD bZIP 231 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01165 Lsi-Chr4:16901349 Lsi05g02181 Lsi-Chr5:28450834 1.31E-30 dispersed
Lsi05g02181 Lsi-Chr5:28450834 Lsi07g01279 Lsi-Chr7:18633125 2.57E-108 dispersed
Lsi07g00391 Lsi-Chr7:4184913 Lsi05g02181 Lsi-Chr5:28450834 3.22E-10 dispersed
Lsi09g00640 Lsi-Chr9:7091257 Lsi05g02181 Lsi-Chr5:28450834 1.13E-10 dispersed
Lsi05g02181 Lsi-Chr5:28450834 Lsi03g01746 Lsi-Chr3:28845899 1.42E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25441 PF04618 HD-ZIP_N 1.30E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02181 - K09338 csv:101222132 452.21