Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g02189 | ATGGAACCATTTTTCAATTGCATTGAAGCATCTGATGCTAAAGCAACTACCTTTTCCAACTCTGCCTCTATCACAACTCATGAATACCAACAAGTTTCTGAGAAGCCAAAACAGAGAACCATTCAAGAAAACAGAGACCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGCAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCCATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTTCCTCGCCCGCTCTCCAAGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCGTCCGCCACATTTTCCGCCGGAAGCAACACTGAAGGTGGAGGAAGGGAAGCGGCGGAGGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACAGGGGAGATAGAACAGAGGACTCCACAAACTCCCTGTCGACGGCGGCCGGTGATGAGACATTGTTCGATTTGCCTGATTTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTTTGTGCGGCGGCCGATCATAATGGTTTTCGGCTGGAAGAGCCTTCATTCTGGGAACTAATTTAA | 687 | 50.66 | MEPFFNCIEASDAKATTFSNSASITTHEYQQVSEKPKQRTIQENRDHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSKSHKDIQAAAAQAASATFSAGSNTEGGGREAAEESRETLFPGSDRGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28515186 | 28515872 | + | Lsi05G021890.1 | Lsi05g02189 | 664681 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g02189 | 228 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g02189 | 228 | PANTHER | ETHYLENE RESPONSE FACTOR | 31 | 226 | - | - | |
Lsi05g02189 | 228 | MobiDBLite | consensus disorder prediction | 146 | 168 | - | - | |
Lsi05g02189 | 228 | Pfam | AP2 domain | 50 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g02189 | 228 | SUPERFAMILY | DNA-binding domain | 49 | 107 | IPR016177 | GO:0003677 | |
Lsi05g02189 | 228 | CDD | AP2 | 50 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g02189 | 228 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 31 | 226 | - | - | |
Lsi05g02189 | 228 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g02189 | 228 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g02189 | 228 | MobiDBLite | consensus disorder prediction | 134 | 175 | - | - | |
Lsi05g02189 | 228 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi05g02189 | 228 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g02189 | Lsi-Chr5:28515186 | Lsi07g01282 | Lsi-Chr7:18716823 | 5.84E-41 | dispersed | |
Lsi05g02189 | Lsi-Chr5:28515186 | Lsi04g02331 | Lsi-Chr4:30517216 | 6.01E-42 | transposed | |
Lsi05g02189 | Lsi-Chr5:28515186 | Lsi11g00240 | Lsi-Chr11:2429121 | 1.75E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25442 | PF00847 | AP2 | 4.30E-15 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g02189 | - | - | cmo:103483130 | 391.734 |