Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02189 ATGGAACCATTTTTCAATTGCATTGAAGCATCTGATGCTAAAGCAACTACCTTTTCCAACTCTGCCTCTATCACAACTCATGAATACCAACAAGTTTCTGAGAAGCCAAAACAGAGAACCATTCAAGAAAACAGAGACCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGCAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCCATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTTCCTCGCCCGCTCTCCAAGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCGTCCGCCACATTTTCCGCCGGAAGCAACACTGAAGGTGGAGGAAGGGAAGCGGCGGAGGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACAGGGGAGATAGAACAGAGGACTCCACAAACTCCCTGTCGACGGCGGCCGGTGATGAGACATTGTTCGATTTGCCTGATTTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTTTGTGCGGCGGCCGATCATAATGGTTTTCGGCTGGAAGAGCCTTCATTCTGGGAACTAATTTAA 687 50.66 MEPFFNCIEASDAKATTFSNSASITTHEYQQVSEKPKQRTIQENRDHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSKSHKDIQAAAAQAASATFSAGSNTEGGGREAAEESRETLFPGSDRGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28515186 28515872 + Lsi05G021890.1 Lsi05g02189 664681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02189 228 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Lsi05g02189 228 PANTHER ETHYLENE RESPONSE FACTOR 31 226 - -
Lsi05g02189 228 MobiDBLite consensus disorder prediction 146 168 - -
Lsi05g02189 228 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Lsi05g02189 228 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Lsi05g02189 228 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Lsi05g02189 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 226 - -
Lsi05g02189 228 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Lsi05g02189 228 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Lsi05g02189 228 MobiDBLite consensus disorder prediction 134 175 - -
Lsi05g02189 228 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Lsi05g02189 228 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02189 Lsi-Chr5:28515186 Lsi07g01282 Lsi-Chr7:18716823 5.84E-41 dispersed
Lsi05g02189 Lsi-Chr5:28515186 Lsi04g02331 Lsi-Chr4:30517216 6.01E-42 transposed
Lsi05g02189 Lsi-Chr5:28515186 Lsi11g00240 Lsi-Chr11:2429121 1.75E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25442 PF00847 AP2 4.30E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02189 - - cmo:103483130 391.734