Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02205 ATGGCACATTTTCTTTTCTTTGCGGCCCTTCTCTCTCTTTCATTTACCCCTTCTTTTTGCTTTCATCCCAAATCCTTCAATGTCTCCAAGTACCAGTCATATGACTCCTCCGATTGGTCGCCGGCCATTGCCACTTGGTATGGTCCCCCTGACGGTGCCGGGAGTGATGGAGGCTCGTGTGGGTATGGAAAGGCGGTGGAGCAACCGCCATTTTCGTCGTTAATTACGGCAGGAGGCCCTTCTTTGTACAAATCTGGCAAAGCCTGTGGAGCTTGTTATCAGGTGAAGTGCTCGGGAGAAGGCGCGTGCTCAGGGAATCCAGTGACGGTGGTTATAACTGATAGTTGTCCTGGCGGCTCATGTGCGTCTGACTCTGTCCACTTTGACCTCAGTGGCACTGCTTTTGGCGCTATGGCTGCAACTGGTCAGGCCGATGAACTCCGCAGTCTTGGCGTTTTGCACATTCAACATAAAAGGGTAGAATGCAATTATCCAGGAATGTCAATCAACTTCATGGTGGATTCGGGGTCGAACTCGAACTATTTCGCAGCTTTGATTGAATATGAAGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAGCAGGCGTTGGACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGTTGGACTCCGGCTCAGCCCTTCAAGCTCCCTTCTCCCTCAGGCTCACCGCCCTCGACTCTGGCAAGACTGTGGTTGCTAACAATGTAATTCCCGCCGGGTGGCAGCCGGGGCAAACTTATAGATCAGTGGTCAACTTCGATACTTAA 810 51.23 MAHFLFFAALLSLSFTPSFCFHPKSFNVSKYQSYDSSDWSPAIATWYGPPDGAGSDGGSCGYGKAVEQPPFSSLITAGGPSLYKSGKACGACYQVKCSGEGACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGQADELRSLGVLHIQHKRVECNYPGMSINFMVDSGSNSNYFAALIEYEDGDGELGSVELKQALDSYSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKTVVANNVIPAGWQPGQTYRSVVNFDT 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28622324 28623334 + Lsi05G022050.1 Lsi05g02205 664697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02205 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 167 IPR007112 -
Lsi05g02205 269 PANTHER EXPANSIN-B3 4 268 - -
Lsi05g02205 269 SUPERFAMILY Barwin-like endoglucanases 33 166 IPR036908 -
Lsi05g02205 269 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Lsi05g02205 269 PRINTS Major pollen allergen Lol pI signature 77 88 IPR005795 GO:0005576|GO:0019953
Lsi05g02205 269 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Lsi05g02205 269 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Lsi05g02205 269 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Lsi05g02205 269 PRINTS Major pollen allergen Lol pI signature 218 235 IPR005795 GO:0005576|GO:0019953
Lsi05g02205 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 263 IPR007117 -
Lsi05g02205 269 SMART dpbb_1 75 157 IPR007112 -
Lsi05g02205 269 PANTHER EXPANSIN-B2-RELATED 4 268 - -
Lsi05g02205 269 Pfam Expansin C-terminal domain 169 252 IPR007117 -
Lsi05g02205 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Lsi05g02205 269 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Lsi05g02205 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Lsi05g02205 269 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Lsi05g02205 269 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lsi05g02205 269 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Lsi05g02205 269 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Lsi05g02205 269 Gene3D - 23 163 IPR036908 -
Lsi05g02205 269 Pfam Lytic transglycolase 76 153 IPR009009 -
Lsi05g02205 269 Gene3D - 164 267 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02205 Lsi-Chr5:28622324 Lsi11g01543 Lsi-Chr11:23762422 7.48E-70 dispersed
Lsi05g02205 Lsi-Chr5:28622324 Lsi10g00889 Lsi-Chr10:13169875 7.50E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02205 - - csv:101219528 475.707