Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g02229 | ATGAAGAGGATTCCAGAGTCAAAAGCACTTCCATTATTACTGCCTATAGAGATGCTTCCAGAATCAAATGTACTTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTAAGAGACGTGGGAAGATCAATTGGACATGGATTTCAAGACTTAGAAGTTTCTGCACCTATACGGACATCAAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAAGCTAAGCATGATGTCATTTTAAAGGGTAGTAGCTCTTTGATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCTCCAGAGCCCGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATAGGGCAAAATAAACCTGATCCTGGCTGCTTGATGAAGAGTTTTTCCGTGAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCACCCAAGAAACCAAGCCCTGCTGTTCTCTCCCCTGCAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCTTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAACGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATCGTTAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGTATTGAAAGGAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTAGTTGGAGCAACATCACAGGAAGTGCTAATAAGCCTCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGATGTGGTGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACGCGCTGTTATTTTGCAATGAAAGTGATGGACAAGGCGTCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACGGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCAGGGAAACACTTCTCTGAGTATGCTGCGAGGTTCTATGCTGCAGAGGTTTTACTGGCCCTCGAATATCTTCACATGCTTGGAGTTGTTTATAGGGACTTGAAACCAGAGAATGTACTGGTTCGTGATGACGGCCACATAATGCTCTCAGATTTCGACCTTTCACTTAGATGTGCAGTATCACCCACCCTGATAAAAACCTCATATGATTCTGACCCATCGAAACGAGCTGCTTTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCTGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATCTGGGGTTGCAATCCAGTACTCTTCCCGAGCTGGTGGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCACGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCACGAACTATTGTATGGAAAAACACCGTTCAAGGGATCCGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCAGAGTCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAGCATCGACTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATAAGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCGGAACTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGCAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAGTATCTTGACTTCGAGTTCTTTTAA | 2184 | 46.02 | MKRIPESKALPLLLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGHGFQDLEVSAPIRTSKGKSSFLGQEEAKHDVILKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF | 727 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28852635 | 28858518 | + | Lsi05G022290.1 | Lsi05g02229 | 664721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g02229 | 727 | Gene3D | Phosphorylase Kinase; domain 1 | 333 | 418 | - | - | |
Lsi05g02229 | 727 | MobiDBLite | consensus disorder prediction | 269 | 308 | - | - | |
Lsi05g02229 | 727 | SUPERFAMILY | Protein kinase-like (PK-like) | 317 | 691 | IPR011009 | - | |
Lsi05g02229 | 727 | ProSiteProfiles | Protein kinase domain profile. | 335 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g02229 | 727 | SMART | serkin_6 | 335 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g02229 | 727 | PANTHER | FLIPPASE KINASE 1-RELATED | 46 | 727 | - | - | |
Lsi05g02229 | 727 | MobiDBLite | consensus disorder prediction | 193 | 207 | - | - | |
Lsi05g02229 | 727 | MobiDBLite | consensus disorder prediction | 269 | 312 | - | - | |
Lsi05g02229 | 727 | Gene3D | Transferase(Phosphotransferase) domain 1 | 419 | 490 | - | - | |
Lsi05g02229 | 727 | Pfam | Protein kinase domain | 336 | 486 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g02229 | 727 | Pfam | Protein kinase domain | 564 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g02229 | 727 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 46 | 727 | - | - | |
Lsi05g02229 | 727 | MobiDBLite | consensus disorder prediction | 191 | 213 | - | - | |
Lsi05g02229 | 727 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 456 | 468 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi05g02229 | 727 | Gene3D | Transferase(Phosphotransferase) domain 1 | 562 | 684 | - | - | |
Lsi05g02229 | 727 | CDD | STKc_phototropin_like | 333 | 686 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01942 | Lsi-Chr1:24956881 | Lsi05g02229 | Lsi-Chr5:28852635 | 0 | dispersed | |
Lsi03g01351 | Lsi-Chr3:24384562 | Lsi05g02229 | Lsi-Chr5:28852635 | 0 | dispersed | |
Lsi05g02229 | Lsi-Chr5:28852635 | Lsi10g01180 | Lsi-Chr10:16085006 | 5.13E-172 | dispersed | |
Lsi11g01320 | Lsi-Chr11:21818657 | Lsi05g02229 | Lsi-Chr5:28852635 | 9.63E-63 | dispersed | |
Lsi05g02229 | Lsi-Chr5:28852635 | Lsi02g01169 | Lsi-Chr2:14326633 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83691 | PF00069 | Pkinase | 5.30E-36 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g02229 | - | - | csv:101217551 | 1396.33 |