Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02229 ATGAAGAGGATTCCAGAGTCAAAAGCACTTCCATTATTACTGCCTATAGAGATGCTTCCAGAATCAAATGTACTTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTAAGAGACGTGGGAAGATCAATTGGACATGGATTTCAAGACTTAGAAGTTTCTGCACCTATACGGACATCAAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAAGCTAAGCATGATGTCATTTTAAAGGGTAGTAGCTCTTTGATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCTCCAGAGCCCGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATAGGGCAAAATAAACCTGATCCTGGCTGCTTGATGAAGAGTTTTTCCGTGAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCACCCAAGAAACCAAGCCCTGCTGTTCTCTCCCCTGCAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCTTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAACGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATCGTTAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGTATTGAAAGGAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTAGTTGGAGCAACATCACAGGAAGTGCTAATAAGCCTCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGATGTGGTGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACGCGCTGTTATTTTGCAATGAAAGTGATGGACAAGGCGTCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACGGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCAGGGAAACACTTCTCTGAGTATGCTGCGAGGTTCTATGCTGCAGAGGTTTTACTGGCCCTCGAATATCTTCACATGCTTGGAGTTGTTTATAGGGACTTGAAACCAGAGAATGTACTGGTTCGTGATGACGGCCACATAATGCTCTCAGATTTCGACCTTTCACTTAGATGTGCAGTATCACCCACCCTGATAAAAACCTCATATGATTCTGACCCATCGAAACGAGCTGCTTTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCTGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATCTGGGGTTGCAATCCAGTACTCTTCCCGAGCTGGTGGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCACGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCACGAACTATTGTATGGAAAAACACCGTTCAAGGGATCCGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCAGAGTCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAGCATCGACTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATAAGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCGGAACTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGCAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAGTATCTTGACTTCGAGTTCTTTTAA 2184 46.02 MKRIPESKALPLLLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGHGFQDLEVSAPIRTSKGKSSFLGQEEAKHDVILKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28852635 28858518 + Lsi05G022290.1 Lsi05g02229 664721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02229 727 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Lsi05g02229 727 MobiDBLite consensus disorder prediction 269 308 - -
Lsi05g02229 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Lsi05g02229 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02229 727 SMART serkin_6 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02229 727 PANTHER FLIPPASE KINASE 1-RELATED 46 727 - -
Lsi05g02229 727 MobiDBLite consensus disorder prediction 193 207 - -
Lsi05g02229 727 MobiDBLite consensus disorder prediction 269 312 - -
Lsi05g02229 727 Gene3D Transferase(Phosphotransferase) domain 1 419 490 - -
Lsi05g02229 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02229 727 Pfam Protein kinase domain 564 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g02229 727 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 46 727 - -
Lsi05g02229 727 MobiDBLite consensus disorder prediction 191 213 - -
Lsi05g02229 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Lsi05g02229 727 Gene3D Transferase(Phosphotransferase) domain 1 562 684 - -
Lsi05g02229 727 CDD STKc_phototropin_like 333 686 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01942 Lsi-Chr1:24956881 Lsi05g02229 Lsi-Chr5:28852635 0 dispersed
Lsi03g01351 Lsi-Chr3:24384562 Lsi05g02229 Lsi-Chr5:28852635 0 dispersed
Lsi05g02229 Lsi-Chr5:28852635 Lsi10g01180 Lsi-Chr10:16085006 5.13E-172 dispersed
Lsi11g01320 Lsi-Chr11:21818657 Lsi05g02229 Lsi-Chr5:28852635 9.63E-63 dispersed
Lsi05g02229 Lsi-Chr5:28852635 Lsi02g01169 Lsi-Chr2:14326633 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83691 PF00069 Pkinase 5.30E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02229 - - csv:101217551 1396.33