Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g02233 ATGGAAACTGGATCCGAAAGCCAAAGAACATTATCAGGGCGAGGGCAGGTTCCGAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTCGTGCAGTTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCCATGCCACCTGCCACCTTTACTACTTCTGCTCACACCTCCCACCTCCTGGCTCGACCTTCTTGGAGTAACCACCAGGTGGGCGGAACGGTGGATCCGAAGGCTGGGAACGAGGAAAACTGCACGGGTAGTGCTAGCGACGGCACCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAGTGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGTTACTATCGTTGCACACATAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGGTAGACACAACCACTCTCCTTGCGACGACTCCAATTCTTCAGAGCACGAACCCTTTACATCCTTCTGA 669 50.97 METGSESQRTLSGRGQVPNINYQVQVSFHLSNAPHDPQPIQEMGFVQLEEQSQVLSFLAPNNAAMPPATFTTSAHTSHLLARPSWSNHQVGGTVDPKAGNEENCTGSASDGTNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28881769 28884464 - Lsi05G022330.1 Lsi05g02233 664725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g02233 222 SUPERFAMILY WRKY DNA-binding domain 140 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g02233 222 Pfam WRKY DNA -binding domain 149 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g02233 222 Gene3D WRKY domain 134 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g02233 222 ProSiteProfiles WRKY domain profile. 143 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g02233 222 SMART WRKY_cls 148 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g02233 222 MobiDBLite consensus disorder prediction 100 121 - -
Lsi05g02233 222 MobiDBLite consensus disorder prediction 96 121 - -
Lsi05g02233 222 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 218 IPR044810 GO:0003700
Lsi05g02233 222 MobiDBLite consensus disorder prediction 203 222 - -
Lsi05g02233 222 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 36 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01103 Lsi-Chr1:9097575 Lsi05g02233 Lsi-Chr5:28881769 9.08E-21 dispersed
Lsi05g02233 Lsi-Chr5:28881769 Lsi08g00885 Lsi-Chr8:17234479 3.27E-34 dispersed
Lsi05g02233 Lsi-Chr5:28881769 Lsi11g01628 Lsi-Chr11:24630520 2.30E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25447 PF03106 WRKY 1.40E-24 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g02233 - - csv:101216931 366.311