Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00004 ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG 711 41.35 MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKAINASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLHKFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVGSTDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSNEGSQFCKGFGGIGGILRYQLDIRSFDELSDGEEYDDSE 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31286 32379 - Lsi06G000040.1 Lsi06g00004 664734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00004 236 Gene3D eRF1 domain 2 64 187 IPR042226 -
Lsi06g00004 236 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 37 IPR004403 GO:0003747|GO:0006415
Lsi06g00004 236 SUPERFAMILY L30e-like 197 220 IPR029064 -
Lsi06g00004 236 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 38 198 - -
Lsi06g00004 236 Pfam eRF1 domain 2 64 197 IPR005141 -
Lsi06g00004 236 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 38 198 IPR004403 GO:0003747|GO:0006415
Lsi06g00004 236 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 197 236 IPR004403 GO:0003747|GO:0006415
Lsi06g00004 236 Gene3D - 188 236 IPR029064 -
Lsi06g00004 236 SUPERFAMILY Translational machinery components 62 196 - -
Lsi06g00004 236 Gene3D eRF1 domain 1 1 38 IPR024049 -
Lsi06g00004 236 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 37 - -
Lsi06g00004 236 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 197 236 - -
Lsi06g00004 236 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 1 60 IPR024049 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00004 Lsi-Chr6:31286 Lsi09g01778 Lsi-Chr9:26524696 2.30E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00004 K03265 - csv:101218139 342.428