Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00012 ATGCCCAAGCCTTTGCTCCTTCTCTTTCTCTTACCACTGGCTTTTACCAACTGGGTTCATGCCTTTCTCCCCTATAACCTCTCTGATTCTTCTCTCTTCGACTCCTATGAAACCTCCTTTGCTGCTACCCTTAATCCTCTCATGGTCCCTCTCACTCTCATTCATGGAGCAGATGCAAAACAAGCAGTCTGTTTGGATGGCACTTTGCCAGGATATCACTTGCATCGTGGATATGGGTCAGGAGCAAATAGCTGGCTTATTCAATTGGAGGGAGGTGGATGGTGTAACAATATCAGGAATTGCGTCTATCGAAAAACAACCAGGCGTGGGTCATCAAGATTTATGGAGAAGCAGATACCATTTACTGGAATCCTGAGTAACAGAGCTGAAGAAAATCCTGACTTTTTTAATTGGAACAGAGTAAAGGTTCGTTACTGTGATGGTGCCTCTTTTACTGGGGATTCAGAAAACAAGGCTGCACAGTTGCAATTTAGAGGACAGCGGATTTGGTTGGCTGCTATGGAAGCATTGAAGGCCGAGGGAATGCGATTTGCTAAACAGGCCTTGCTTTCTGGATGCTCTGCTGGAGGTTTGGCATCTATTTTACACTGTGATGAGTTTAGAGCCTTATTTCCAAGAACTACTAAAATAAAATGTCTGAGTGATGCGGGACTATTCCTTGATGTGGCTGATATATCTGGAGGGCACTACATTAGAAACTTATTTGGAGGTGTGGTGGGCTTGCAGGGAGCAGGAAGGAATCTGCCATCCTTTTGTACGAGCCATCTTGATCCAACTTCGTGTTTCTTCCCACAAAATTTAATTGCTGGAATCAGAACCCCACTGTTTCTTGTCAACGCCGCATACGATTCCTGGCAGATACAATCCAGTATAGCCCCACCTTCTCTGGATCCAGCTGGGTATTGGCATGATTGTAGGCTGAATCATGCAAAATGTAACCAACCTCAGATTCAATTTCTTCAAGGATTCAGGAACCAAATGTTGAATGCTGTTAGCGATTTCTCAAAATCCTCTCAAAATGGGTTATTTATTAATTCATGTTTTGCTCACTGCCAAACTGAGAGACAGGACACATGGTTTGGCGACAATTCTCCTGTCATCGGAAACAAGCCAATTGCTCTGGCTGTTGGAGATTGGTACTTCGATCGAGCAGCGGTGAAAGCAATCGATTGTCCCTATCCTTGTGACAGTACTTGCCACCATCTGGTTTTTAGAAGCGGTTAG 1245 44.42 MPKPLLLLFLLPLAFTNWVHAFLPYNLSDSSLFDSYETSFAATLNPLMVPLTLIHGADAKQAVCLDGTLPGYHLHRGYGSGANSWLIQLEGGGWCNNIRNCVYRKTTRRGSSRFMEKQIPFTGILSNRAEENPDFFNWNRVKVRYCDGASFTGDSENKAAQLQFRGQRIWLAAMEALKAEGMRFAKQALLSGCSAGGLASILHCDEFRALFPRTTKIKCLSDAGLFLDVADISGGHYIRNLFGGVVGLQGAGRNLPSFCTSHLDPTSCFFPQNLIAGIRTPLFLVNAAYDSWQIQSSIAPPSLDPAGYWHDCRLNHAKCNQPQIQFLQGFRNQMLNAVSDFSKSSQNGLFINSCFAHCQTERQDTWFGDNSPVIGNKPIALAVGDWYFDRAAVKAIDCPYPCDSTCHHLVFRSG 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 123755 130542 + Lsi06G000120.1 Lsi06g00012 664742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00012 414 PANTHER NOTUM-RELATED 10 411 IPR004963 GO:0016787
Lsi06g00012 414 Pfam Pectinacetylesterase 45 391 IPR004963 GO:0016787
Lsi06g00012 414 PANTHER PECTIN ACETYLESTERASE 10 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01427 Lsi-Chr1:12399603 Lsi06g00012 Lsi-Chr6:123755 1.85E-23 dispersed
Lsi05g01217 Lsi-Chr5:20072517 Lsi06g00012 Lsi-Chr6:123755 7.47E-78 dispersed
Lsi06g00012 Lsi-Chr6:123755 Lsi07g00767 Lsi-Chr7:8365706 2.91E-156 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00012 K19882 - csv:101218273 832.402