Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00020 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAGCCTATTTCGGTCGCAAAATCGCAATTGATGCCAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAAAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATTGAGGTTGGCAACAAAGAGGACATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAGCAGCATAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTGATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAGGAGCTGAACCTCACCATGGATCAATTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCAGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAGCATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAAAGGTACCAAATTCCAGATGATTGGCCTTATCAACACGCCCGACAGCTTTTTAAAGAACCACTAGTATGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTCACTAATCCTTCAGTATCCATTAAGCGAAAGGTAAACAAATGTGTACTTAGGTCTCCCAAACCAGGAGCCCAACATAAATTCTCCCCACAAGCATTTTATTCGTCAAGGACAAAGGTCATTGGTAGCCTAGGCATGTCAATGTTCTACCATTCCTCCAACTACTCGGGGTCAGGGCCATTAGTTATGGCTGTATGCTTCGGCACATGA 1197 43.19 MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIETILENINKERYQIPDDWPYQHARQLFKEPLVCTDEEQLDIKWTTPDEEAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVNKCVLRSPKPGAQHKFSPQAFYSSRTKVIGSLGMSMFYHSSNYSGSGPLVMAVCFGT 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 188046 200112 + Lsi06G000200.1 Lsi06g00020 664750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00020 398 Hamap Flap endonuclease 1 [fen]. 1 350 IPR023426 GO:0016788
Lsi06g00020 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lsi06g00020 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lsi06g00020 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lsi06g00020 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lsi06g00020 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lsi06g00020 398 SMART 53exo3 29 340 IPR002421 GO:0003677
Lsi06g00020 398 PANTHER FLAP ENDONUCLEASE 1 1 357 - -
Lsi06g00020 398 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 334 IPR036279 -
Lsi06g00020 398 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Lsi06g00020 398 CDD PIN_FEN1 4 219 - -
Lsi06g00020 398 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Lsi06g00020 398 Gene3D - 10 222 - -
Lsi06g00020 398 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Lsi06g00020 398 SMART xpgineu 147 219 IPR006086 GO:0004518
Lsi06g00020 398 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lsi06g00020 398 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Lsi06g00020 398 SMART xpgn3 1 108 IPR006085 GO:0004518
Lsi06g00020 398 Gene3D - 223 286 - -
Lsi06g00020 398 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Lsi06g00020 398 CDD H3TH_FEN1-Euk 222 289 - -
Lsi06g00020 398 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 357 IPR006084 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00020 Lsi-Chr6:188046 Lsi09g01931 Lsi-Chr9:28125515 8.61E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00020 K04799 - csv:101204273 658.677