Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00024 | ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTAATGAAGAAGGTTAGTGAATTGAGCACTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCCTACGATTCTCAGCCTGAGCTCTGGCCTTCCCCTATTGGAGTCCAACGCGTTCTCTCTCAGTTCAAAAAGATGCCCGAGATGGAACAGAGCAAAAAGATGGTGAACCAAGAGACGTTTCTGCGGCAGAGGATCGCAAAAGCGAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGGGAGAAGGAGATCACACGGCTGATGTTTCAGAGCCTCACTGCAGCAAAAGGGCTGCATGGTCTCAACATGCTTGATTTGAACGACCTCGGTTGGCTCATCGATCAGAATCTTAAAGACATTGTTACACGTATTGACTCACTGAAAAAGCCTTCGACGCAGCTTCAACCTCAGGCTCAGCCTCCGCCTCCGTCTCAACCACCACAAACTCAGCCGCAGACGGCGGCGTGGCTGATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGATGATATGCTTTCGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAATGCCTTTTTCCCTTAG | 678 | 48.08 | MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDIVTRIDSLKKPSTQLQPQAQPPPPSQPPQTQPQTAAWLMELVSPQDQMGFVGDDMLSPFGDQTYNPNNAMWSNAFFP | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 234115 | 235027 | + | Lsi06G000240.1 | Lsi06g00024 | 664754 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00024 | 225 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 1 | 185 | - | - | |
Lsi06g00024 | 225 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 185 | - | - | |
Lsi06g00024 | 225 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Lsi06g00024 | 225 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Lsi06g00024 | 225 | Gene3D | - | 13 | 115 | IPR036879 | GO:0003677|GO:0046983 | |
Lsi06g00024 | 225 | Coils | Coil | 87 | 114 | - | - | |
Lsi06g00024 | 225 | MobiDBLite | consensus disorder prediction | 159 | 180 | - | - | |
Lsi06g00024 | 225 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01097 | Lsi-Chr2:12461068 | Lsi06g00024 | Lsi-Chr6:234115 | 1.53E-77 | dispersed | |
Lsi03g01808 | Lsi-Chr3:29508306 | Lsi06g00024 | Lsi-Chr6:234115 | 5.32E-41 | dispersed | |
Lsi06g00024 | Lsi-Chr6:234115 | Lsi10g00750 | Lsi-Chr10:10337886 | 4.36E-13 | dispersed | |
Lsi06g00024 | Lsi-Chr6:234115 | Lsi08g01026 | Lsi-Chr8:18835515 | 2.84E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25451 | PF00319 | SRF-TF | 6.50E-19 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00024 | - | - | csv:101203059 | 398.667 |