Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00024 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTAATGAAGAAGGTTAGTGAATTGAGCACTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCCTACGATTCTCAGCCTGAGCTCTGGCCTTCCCCTATTGGAGTCCAACGCGTTCTCTCTCAGTTCAAAAAGATGCCCGAGATGGAACAGAGCAAAAAGATGGTGAACCAAGAGACGTTTCTGCGGCAGAGGATCGCAAAAGCGAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGGGAGAAGGAGATCACACGGCTGATGTTTCAGAGCCTCACTGCAGCAAAAGGGCTGCATGGTCTCAACATGCTTGATTTGAACGACCTCGGTTGGCTCATCGATCAGAATCTTAAAGACATTGTTACACGTATTGACTCACTGAAAAAGCCTTCGACGCAGCTTCAACCTCAGGCTCAGCCTCCGCCTCCGTCTCAACCACCACAAACTCAGCCGCAGACGGCGGCGTGGCTGATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGATGATATGCTTTCGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAATGCCTTTTTCCCTTAG 678 48.08 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDIVTRIDSLKKPSTQLQPQAQPPPPSQPPQTQPQTAAWLMELVSPQDQMGFVGDDMLSPFGDQTYNPNNAMWSNAFFP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 234115 235027 + Lsi06G000240.1 Lsi06g00024 664754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00024 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi06g00024 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi06g00024 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi06g00024 225 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lsi06g00024 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 185 - -
Lsi06g00024 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 - -
Lsi06g00024 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lsi06g00024 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lsi06g00024 225 MobiDBLite consensus disorder prediction 164 178 - -
Lsi06g00024 225 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lsi06g00024 225 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Lsi06g00024 225 Coils Coil 87 114 - -
Lsi06g00024 225 MobiDBLite consensus disorder prediction 159 180 - -
Lsi06g00024 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01097 Lsi-Chr2:12461068 Lsi06g00024 Lsi-Chr6:234115 1.53E-77 dispersed
Lsi03g01808 Lsi-Chr3:29508306 Lsi06g00024 Lsi-Chr6:234115 5.32E-41 dispersed
Lsi06g00024 Lsi-Chr6:234115 Lsi10g00750 Lsi-Chr10:10337886 4.36E-13 dispersed
Lsi06g00024 Lsi-Chr6:234115 Lsi08g01026 Lsi-Chr8:18835515 2.84E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25451 PF00319 SRF-TF 6.50E-19 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00024 - - csv:101203059 398.667