Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00026 ATGAAAGTATGGTTTCGTGAAGGGGGAAATAGGGATATTAAGGATCCACTGGGAAGAGGAAGACCTGATTGCCCAAAGACCCCCAACACTACAACCCTTCTGCTTTCGGAGGCAATACAAATGGATTATCGGGGTTACAGTAGTAGACTGGAAACAAACAACCCAAATAAAGGCTATGCTCAGGAGCAGGGATCCCTTGCTGATGACTTTATAGATGATTTTCGCTTGCCCATTAACCATAAACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACTTCATCAAATGTGGGATATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATATCCAGCGGAAAAAACTTGATGTCGAGGTGGAAGAGACAGAAGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCAATGGAATTTGAAGCTCATCTCAGCTCATATGATCATAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACATGCCCGGAAGAAGCAGCAGCAGATGCTGGAGCAAAAAGAAAAAGCAGTCGAGGCTCCTGTTTCAACTGAACTTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCGAAGAACATATTTGGTGGAGCCACAAAGAAACCGAAAGTAGCACCTGTAGCTTCAGTTTTCGGGAATGATAGCGATGACGAATTGTAA 984 41.57 MKVWFREGGNRDIKDPLGRGRPDCPKTPNTTTLLLSEAIQMDYRGYSSRLETNNPNKGYAQEQGSLADDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQHARKKQQQMLEQKEKAVEAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKNIFGGATKKPKVAPVASVFGNDSDDEL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 267133 270910 + Lsi06G000260.1 Lsi06g00026 664756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00026 327 SMART G-patch_5 100 145 IPR000467 GO:0003676
Lsi06g00026 327 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 44 326 - -
Lsi06g00026 327 Coils Coil 243 264 - -
Lsi06g00026 327 MobiDBLite consensus disorder prediction 230 327 - -
Lsi06g00026 327 Pfam G-patch domain 103 143 IPR000467 GO:0003676
Lsi06g00026 327 MobiDBLite consensus disorder prediction 230 268 - -
Lsi06g00026 327 SUPERFAMILY beta-beta-alpha zinc fingers 178 231 IPR036236 -
Lsi06g00026 327 MobiDBLite consensus disorder prediction 7 21 - -
Lsi06g00026 327 ProSitePatterns Zinc finger C2H2 type domain signature. 199 221 IPR013087 -
Lsi06g00026 327 ProSiteProfiles G-patch domain profile. 102 147 IPR000467 GO:0003676
Lsi06g00026 327 Pfam Zinc-finger double-stranded RNA-binding 197 224 IPR022755 -
Lsi06g00026 327 MobiDBLite consensus disorder prediction 7 29 - -
Lsi06g00026 327 MobiDBLite consensus disorder prediction 271 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00026 Lsi-Chr6:267133 Lsi09g00890 Lsi-Chr9:10458969 8.20E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00026 - - cmo:103492095 536.184