Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00055 ATGGTTTGTGAAGAAGAAGCTCTAATTCAAAAAGTTAGTGAATTATATGATGAAATCTCAAGCCTTGAAAGCCTCAAACCTTGTAACCATGTCGACACTCTCTTCACTAAGTTGGTGGTCACGTGCATGTCACCCACCTCACCTCATTTCCATATCAATTCACTTTCGAAACCACTTCAACAAATGAGATCAAATCTCATTAGCCTTTGTGGTCAAGCTGAGTCTCTTTTAGAGTCTCATTTTTCTGATCTCTTAGCCAAATTCGATTCCCCTATTCACCATCTTCATGTCTTCCCTTACTTCTCTAATTATCTTAAACTTAGTCTCCTTGAATTCTCCATCCTTTCCCGCCACTGCCCCGTCGTTCCCTCCTCCGTCGCCTTCGTTGGCTCTGGTCCTCTTCCTCTTACCTCCATCGTCCTCGCCACCCGCCACCTCACCTCCACTATCTTCCACAACTACGATCTTGACCCGCTTGCTAATTCCAAGGTTATATATGTTGTCGACTCGGACCTGAAGACGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACAGAGGAGCTGAAACAGTACGAGGTTGTGTTTTTGGCAGCTCTTGTAGGAATGGAGAAAGAGGAGAAATTGAAAGTGATTAAGCATTTGTCAGAGTTCATGTCAGAAGGGGCTTATTTGATGGTAAGAAGTGCACATGGAGGAAGAGCTTTTCTATATCCTGTTGTTGAAGATTGTGATTTGGTAGGGTTTGAGGTTTTATCTGTGTTTCATCCCACTGATGAAGTTATAAACTCAGTAATAATTGCACGAAAAAAGACGACTTTCGATAACGATAACATTAACGACAACGACAACGATAACAACGATGACGAAGAAGGCTGTTTGTCTGTTAATTTAGACAAACAAGAGGAAGATGAAAATAAGAAGGTGAAGATTAGCAGTGGAATTGATCATAAGAATAATAATGGAGTTGTGCATAATAACAAATGTTCTGAGATTCAAAGCTTCAATAACCATGGAGGTAAGATTGAGGAATTTGCCATGGAAGCTGAGTAG 1056 41.29 MVCEEEALIQKVSELYDEISSLESLKPCNHVDTLFTKLVVTCMSPTSPHFHINSLSKPLQQMRSNLISLCGQAESLLESHFSDLLAKFDSPIHHLHVFPYFSNYLKLSLLEFSILSRHCPVVPSSVAFVGSGPLPLTSIVLATRHLTSTIFHNYDLDPLANSKVIYVVDSDLKTRMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLKVIKHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVIIARKKTTFDNDNINDNDNDNNDDEEGCLSVNLDKQEEDENKKVKISSGIDHKNNNGVVHNNKCSEIQSFNNHGGKIEEFAMEAE 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 447411 449095 - Lsi06G000550.1 Lsi06g00055 664785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00055 351 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Lsi06g00055 351 PANTHER NICOTIANAMINE SYNTHASE 3 1 273 IPR004298 GO:0030410|GO:0030418
Lsi06g00055 351 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
Lsi06g00055 351 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Lsi06g00055 351 PANTHER SYNTHASE, PUTATIVE-RELATED 1 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00055 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101218907 548.895
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi06g00055 Lsi11g00633 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00055 Lsi-Chr6:447411 Lsi11g00634 Lsi-Chr11:6700569 4.89E-56 dispersed
Lsi06g01131 Lsi-Chr6:21563174 Lsi06g00055 Lsi-Chr6:447411 4.52E-102 transposed
Lsi11g00633 Lsi-Chr11:6689014 Lsi06g00055 Lsi-Chr6:447411 6.06E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g103 . Blo11g00537 Bda07g01301 Bda12g00443 Bpe11g01412 Bpe09g00561 Bma13g00601 Bma14g01298 . Cmo11g01291 Cma05g01074 Cma12g01028 Car05g00944 Car12g00985 Sed04g0413 Cpe07g00861 Cpe11g00876 Bhi02g02191 Tan09g0075 Cmetu02g0264 . Hepe09g1731 . . Cla02g01476 Cam02g1554 Cec02g1579 Cco02g1621 Clacu02g1536 Cmu02g1490 Cre02g1814 Cone10ag0818 Cone3ag0844 . . Lsi06g00055 Csa02g00501 Chy08g01076 Cme05g01548 . . Bda01g01647 . . Bpe02g01840 . . Sed11g0410 Cmo05g01085 Cmo12g01034 . Cma11g01235 . Car11g01035 Cpe04g00225 . Bhi06g01502 Tan08g0663 Cmetu05g1650 . Hepe08g2258 . . Cla03g01694 Cam03g1780 Cec03g1831 Cco03g1834 Clacu03g1805 Cmu03g2355 Cre03g2034 Lsi11g00633 Csa01g02710 Chy05g01038 Cme02g00033
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00633 CCT 1 276 Nicotianamine Synthase Gene Family AT1G09240 59.6 4.1e-89 325.1
Lsi06g00055 CCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 58.5 1.5e-88 323.2
Lsi06g01131 . 16 285 Nicotianamine Synthase Gene Family AT1G09240 55.1 2.3e-76 282.7
Lsi11g00635 . 1 116 Nicotianamine Synthase Gene Family AT1G09240 65.5 3.9e-39 159.1
Lsi11g00634 . 1 147 Nicotianamine Synthase Gene Family AT1G09240 53.4 5.1e-39 158.7
Lsi06g00055 CCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 60.1 8.0e-93 337.4
Lsi11g00633 CCT 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.7 2.2e-90 329.3
Lsi06g01131 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.1 1.5e-78 290.0
Lsi11g00634 . 4 147 Nicotianamine Synthase Gene Family AT1G56430 55.2 8.4e-42 167.9
Lsi11g00635 . 1 159 Nicotianamine Synthase Gene Family AT1G56430 55.8 1.4e-41 167.2
Lsi11g00633 CCT 1 276 Nicotianamine Synthase Gene Family AT5G04950 58.4 4.4e-91 331.6
Lsi06g00055 CCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 54.3 1.2e-85 313.5
Lsi06g01131 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 51.5 4.1e-73 271.9
Lsi11g00634 . 8 146 Nicotianamine Synthase Gene Family AT5G04950 53.9 2.5e-38 156.4
Lsi11g00635 . 1 113 Nicotianamine Synthase Gene Family AT5G04950 63.7 4.7e-37 152.1
Lsi11g00633 CCT 1 276 Nicotianamine Synthase Gene Family AT5G56080 57.9 1.4e-89 326.6
Lsi06g00055 CCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 56.0 2.2e-87 319.3
Lsi06g01131 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.7 5.9e-72 268.1
Lsi11g00634 . 1 146 Nicotianamine Synthase Gene Family AT5G56080 53.1 1.0e-39 161.0
Lsi11g00635 . 1 113 Nicotianamine Synthase Gene Family AT5G56080 62.8 1.4e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00055 Lsi_Chr06 FPKM 73.904137 82.671799 8.509111 8.554389 8.946169 10.857256 12.225957 5.799086 4.652013 4.409372