Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00055 ATGGTTTGTGAAGAAGAAGCTCTAATTCAAAAAGTTAGTGAATTATATGATGAAATCTCAAGCCTTGAAAGCCTCAAACCTTGTAACCATGTCGACACTCTCTTCACTAAGTTGGTGGTCACGTGCATGTCACCCACCTCACCTCATTTCCATATCAATTCACTTTCGAAACCACTTCAACAAATGAGATCAAATCTCATTAGCCTTTGTGGTCAAGCTGAGTCTCTTTTAGAGTCTCATTTTTCTGATCTCTTAGCCAAATTCGATTCCCCTATTCACCATCTTCATGTCTTCCCTTACTTCTCTAATTATCTTAAACTTAGTCTCCTTGAATTCTCCATCCTTTCCCGCCACTGCCCCGTCGTTCCCTCCTCCGTCGCCTTCGTTGGCTCTGGTCCTCTTCCTCTTACCTCCATCGTCCTCGCCACCCGCCACCTCACCTCCACTATCTTCCACAACTACGATCTTGACCCGCTTGCTAATTCCAAGGTTATATATGTTGTCGACTCGGACCTGAAGACGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACAGAGGAGCTGAAACAGTACGAGGTTGTGTTTTTGGCAGCTCTTGTAGGAATGGAGAAAGAGGAGAAATTGAAAGTGATTAAGCATTTGTCAGAGTTCATGTCAGAAGGGGCTTATTTGATGGTAAGAAGTGCACATGGAGGAAGAGCTTTTCTATATCCTGTTGTTGAAGATTGTGATTTGGTAGGGTTTGAGGTTTTATCTGTGTTTCATCCCACTGATGAAGTTATAAACTCAGTAATAATTGCACGAAAAAAGACGACTTTCGATAACGATAACATTAACGACAACGACAACGATAACAACGATGACGAAGAAGGCTGTTTGTCTGTTAATTTAGACAAACAAGAGGAAGATGAAAATAAGAAGGTGAAGATTAGCAGTGGAATTGATCATAAGAATAATAATGGAGTTGTGCATAATAACAAATGTTCTGAGATTCAAAGCTTCAATAACCATGGAGGTAAGATTGAGGAATTTGCCATGGAAGCTGAGTAG 1056 41.29 MVCEEEALIQKVSELYDEISSLESLKPCNHVDTLFTKLVVTCMSPTSPHFHINSLSKPLQQMRSNLISLCGQAESLLESHFSDLLAKFDSPIHHLHVFPYFSNYLKLSLLEFSILSRHCPVVPSSVAFVGSGPLPLTSIVLATRHLTSTIFHNYDLDPLANSKVIYVVDSDLKTRMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLKVIKHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVIIARKKTTFDNDNINDNDNDNNDDEEGCLSVNLDKQEEDENKKVKISSGIDHKNNNGVVHNNKCSEIQSFNNHGGKIEEFAMEAE 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 447411 449095 - Lsi06G000550.1 Lsi06g00055 664785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00055 351 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Lsi06g00055 351 PANTHER NICOTIANAMINE SYNTHASE 3 1 273 IPR004298 GO:0030410|GO:0030418
Lsi06g00055 351 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
Lsi06g00055 351 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Lsi06g00055 351 PANTHER SYNTHASE, PUTATIVE-RELATED 1 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00055 Lsi11g00633 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00055 Lsi-Chr6:447411 Lsi11g00634 Lsi-Chr11:6700569 4.89E-56 dispersed
Lsi06g01131 Lsi-Chr6:21563174 Lsi06g00055 Lsi-Chr6:447411 4.52E-102 transposed
Lsi11g00633 Lsi-Chr11:6689014 Lsi06g00055 Lsi-Chr6:447411 6.06E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00055 K05953 - csv:101218907 548.895