Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00069 ATGAAATACTTGTTCTTGAAGTTCAATGAACTAACAAAGTCACTAACTCCCAAGAAATGGAGAAACTCTGAAAATGTTTCTGATGCATGTGGGAGAGAAGCTGCAGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTCCGGTAGTATAAATATTGATGGTTCGAGCAACTTTGTCTCGAGTTTTTCGAAGAGGGGTGAGAAAGGAATCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGCCATGGACCATGGGGCCATTTTGTTGCAAAAAATGTTAGAGAGTCAATGCCAACTGCTCTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAGCTCAACTCAAGTAAAACACATCTACAGTTCAATTTGTGGGAGCATTCTTATATAGAAGCTTGTGCTGTGGTGGATCAAGAACTCGAGCGACACTGTAAAATCGACACGTTTCATAGCGGAACAACGGCCCTTTCCATCGTTCGACAAGGTGATACGATTGTCATAGCAAACCTTGGCGACTCCCGAGCGGTGTTGGCTACAACTTCTAATGATGGAAATTCGACACCATCACCAATTCAGCTCACTATCGATTTCAAACCGAATCTACCTCAGGAAGCTGAAAGGATAACACAATGCAATGGGAGGGTTTTCTGCTTGCAAGATGAACCAGGGACTCACCGTCTTTGGTTGCCGAACGAGGAAACGCCGGGGCTATCAATGTCGAGAGCGTTTGGCGATTTTTGCGTTAAGCATTTTGGACTTATTTCCATGCCTGATGTAACACAAAGAAGTGTAACCAACAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGATGTGGTCACGAATCAAGAAGCTGTACAGATCGTACATTCAACTGTAGATAGAGAAAAATCTGCTCGACGATTGGTTGATTATGCTACTCGTGCATGGAAGCGAAAGAGGCCGAGAATTGCAATGGATGATATGTCGAAGCAAGATGCCTTGCAAGCCCTTCATGATATTATCACTTCAAAGAGATATCGATCATGGCAGAAACCTCTTGAGAAGATTATGTTTAAGTATGTTGACCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAAGATGGCTTAATTCAATACCGTATTGTTTGCCAGCAAGTTAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCTGAGCAGGCTCGCAGTCAAGCTCAAGCTTTAGAAGAAGCTCTGGACGTTGATGATCTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAGAAGGGAAAGGATAGATCTGATCGCGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAAATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTATAAAAGAAAAACTGAATTTCGCAGATTATGTGAAATTATCCGAAATCATCTTGCTAATCTTAACAAGTATAGAGACCAAAGAGATCGGCCCGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTATGTCAAATTAACAGAGATCTTCTGGATATCGGATAGGAATCTTTACCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAAGATTTACAGCTGATAGCTTCATCTGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTACGACTCCAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAACGAAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGACTCCAAACTCGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTACTAAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTTCCACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGTCTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCATGGAGAAATTATCAGTTGATGCAGTTAAACAAAATTTTATTGCCATGAAAGTTGATCATTCAAGGAACGTTGTGTTATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGACTGTTCTTGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTGGGAAAGCATCAAAAACAGGTGACATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGCTGCTTGCTCGGAAATTAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAGCTTTTGGAACTGGAACGCGAGGAGGAATCAAAAAGGTTAAAATTACTGAAGATAAGTGAAGAGGCTGAGCAGAAGCGGCTTGCGGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGAGAAATTGAAGAACGGGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTTGACTCTGAAAAGTTGACGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATTCACGAACGTGATCAGCAGCTCGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGTCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATGAATCTTCGCCAAGAGGAGTTCAGCAGACGTAGAGCTGAGAAAGAAGAACAGATCAGGCAAATAATTCAGGCTCGGAAAGCAGAGAGGGAGGCTAAGAGGAAAACAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAGGGAAGAAGCTGAACGCAAGGCTAAACTGGATGAAATTGCTGAGAAGCAGAGACAAAGGGAGCGAGAATTGGAAGAAAAGGAAAGAATGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAGCTGATGCGCCTGCTAGACCTGATGTTACCACTGGTTCTCAGCCTCTGGAGTCCGGTACTGCTGCTCCTGCTGCTCCTGCTGCTGCAGCTGCCGCTACTGCTACATCTCCAGCAAAATACGTGCCAAGGTTTCGACGGACTGAAGGCTCCAGCCCTAATGCACCACCACCTGAATCCAATCGATGGGGAAGCAGCAGGCCTGATAATCGACCATCTCAACCTGATAGCTGGCGCAGTGATGACCGTAAACCTGCTTTTGGAAGTTCAAGGTCGTCATGGTCCTCATCCCGAGCTTCTACTCGTTCTAGCACGGACCGCTGA 3906 43.24 MKYLFLKFNELTKSLTPKKWRNSENVSDACGREAAEAMAKSAKKKDLIIHGSGSINIDGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKNVRESMPTALLCNWQEALVQTSLHPHLELNSSKTHLQFNLWEHSYIEACAVVDQELERHCKIDTFHSGTTALSIVRQGDTIVIANLGDSRAVLATTSNDGNSTPSPIQLTIDFKPNLPQEAERITQCNGRVFCLQDEPGTHRLWLPNEETPGLSMSRAFGDFCVKHFGLISMPDVTQRSVTNKDLFVVLATDGIWDVVTNQEAVQIVHSTVDREKSARRLVDYATRAWKRKRPRIAMDDMSKQDALQALHDIITSKRYRSWQKPLEKIMFKYVDLCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRKTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDRNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLSTLRLLQQVSKVYQSMKIESLSQMIPFFDFSAMEKLSVDAVKQNFIAMKVDHSRNVVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVGKASKTGDILPDLADIVDKEHKRLLARKLIIEKRKEEQERQLLELEREEESKRLKLLKISEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLSRMLESKKIFQERVMNLRQEEFSRRRAEKEEQIRQIIQARKAEREAKRKTIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERMRKEMLFGGGRSADAPARPDVTTGSQPLESGTAAPAAPAAAAAATATSPAKYVPRFRRTEGSSPNAPPPESNRWGSSRPDNRPSQPDSWRSDDRKPAFGSSRSSWSSSRASTRSSTDR 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 607397 621786 + Lsi06G000690.1 Lsi06g00069 664799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00069 1301 ProSiteProfiles PPM-type phosphatase domain profile. 63 357 IPR001932 -
Lsi06g00069 1301 ProSiteProfiles PCI domain profile. 645 842 IPR000717 -
Lsi06g00069 1301 Coils Coil 998 1028 - -
Lsi06g00069 1301 Coils Coil 422 449 - -
Lsi06g00069 1301 Gene3D - 56 352 IPR036457 -
Lsi06g00069 1301 SMART PINT_4 770 861 IPR000717 -
Lsi06g00069 1301 SMART PP2C_4 54 355 IPR001932 -
Lsi06g00069 1301 CDD PP2Cc 62 351 IPR001932 -
Lsi06g00069 1301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 349 1244 - -
Lsi06g00069 1301 Gene3D UVR domain 546 597 - -
Lsi06g00069 1301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 349 1244 IPR027512 GO:0005852
Lsi06g00069 1301 Coils Coil 1128 1187 - -
Lsi06g00069 1301 Gene3D - 692 823 - -
Lsi06g00069 1301 Gene3D - 598 672 - -
Lsi06g00069 1301 MobiDBLite consensus disorder prediction 1144 1190 - -
Lsi06g00069 1301 SUPERFAMILY PP2C-like 63 351 IPR036457 -
Lsi06g00069 1301 MobiDBLite consensus disorder prediction 1281 1301 - -
Lsi06g00069 1301 Pfam Protein phosphatase 2C 130 336 IPR001932 -
Lsi06g00069 1301 Pfam PCI domain 703 838 IPR000717 -
Lsi06g00069 1301 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 770 861 - -
Lsi06g00069 1301 Coils Coil 1074 1123 - -
Lsi06g00069 1301 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 340 1276 IPR027512 GO:0005852
Lsi06g00069 1301 Coils Coil 890 978 - -
Lsi06g00069 1301 MobiDBLite consensus disorder prediction 1247 1267 - -
Lsi06g00069 1301 MobiDBLite consensus disorder prediction 1144 1301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00950 Lsi-Chr2:9474921 Lsi06g00069 Lsi-Chr6:607397 0 dispersed
Lsi02g00951 Lsi-Chr2:9488829 Lsi06g00069 Lsi-Chr6:607397 4.77E-67 dispersed
Lsi06g00069 Lsi-Chr6:607397 Lsi11g00963 Lsi-Chr11:15029915 3.39E-98 dispersed
Lsi11g00609 Lsi-Chr11:6480557 Lsi06g00069 Lsi-Chr6:607397 3.05E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00069 K03254 - csv:101215735 1505.73