Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00071 ATGAGTCAGACAGAAGTATCAAGGATAAAGCCCCCTCTCGTTCCGCTCGCTACTTTGATTGGTCGCGAGCTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCCGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATCAAACTTGATTGCCAGCGTATTCCTGGGAACCCTTCCACTGCATTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCCGCTATTTTTGCCAAGGAACATTTATTGGGTAATGTCCTAAGTGCAATTCCTCAAGGGGCCAATCGAGAAAAATGGCTTCAGGCGCTTCCCCGAGCACTAGTTGCTGGTTTTGTTAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACGGTTACATTTGTTGTGATAGATGGGTGGACTGTTACTGTTGCATCCGTGGGAGATTCACGTTGCATACTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACAGTTGATCATAGGTTGGAGGAAAATGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGTGAGGTTGGGAGGCTCAATGTTTTTGGCGGGAATGAGGTCGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCAATACCACATGTTAAGCAAGTGAAGCTTTCTAATGCTGGTGGAAGGCTAATTATTGCTTCTGATGGTATTTGGGACGCATTATCATCTGAGATGGCTGCAAAGAGCCTCAAGCTGTCTTTAGCGTTGGAAGAGGCTTTACGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATCCCATCCGAGCAACCTATATTATTACCATCAACTCCAAGGAAGAAGCAAAATGTGCTCACCTCATTCTTTGGGAAGAAATATCAAAACTCTTTGGGTAAATCTGCGAACAAACTTTCTGCTGTTGGAGTTGTGGAGGAATTGTTTGAAGAAGGTTCTGCTATGCTTGCTGAAAGGCTAGGCAAAGATTTTCCTTCGGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGTGGATCAACCCCCAAATGAAAATTTGTCGATGAACTCGGGGCCTTTCTTTTCACCGTCATCGAAACCATGGGAAGGTCCATTCCTCTGTGCAACTTGTAGAAAAAAGAAAGACGCCATGGAAGGAAAAAGGCCAATAAAACCTACAATAACCGTTTAG 1266 44.71 MSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCQRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGANREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSEMAAKSLKLSLALEEALRSRGLKDDTTCLVVDIIPSEQPILLPSTPRKKQNVLTSFFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDFPSDPNSGIFKCAVCQVDQPPNENLSMNSGPFFSPSSKPWEGPFLCATCRKKKDAMEGKRPIKPTITV 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 628499 632593 - Lsi06G000710.1 Lsi06g00071 664801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00071 421 ProSiteProfiles PPM-type phosphatase domain profile. 32 290 IPR001932 -
Lsi06g00071 421 SMART PP2C_4 23 288 IPR001932 -
Lsi06g00071 421 CDD PP2Cc 43 290 IPR001932 -
Lsi06g00071 421 Gene3D - 38 295 IPR036457 -
Lsi06g00071 421 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 420 - -
Lsi06g00071 421 PANTHER ALPHABET, ISOFORM E-RELATED 2 420 - -
Lsi06g00071 421 SMART PP2C_SIG_2 51 290 IPR001932 -
Lsi06g00071 421 Pfam Protein phosphatase 2C 62 265 IPR001932 -
Lsi06g00071 421 SUPERFAMILY PP2C-like 43 290 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00236 Lsi-Chr4:2393547 Lsi06g00071 Lsi-Chr6:628499 0 dispersed
Lsi04g01574 Lsi-Chr4:23320553 Lsi06g00071 Lsi-Chr6:628499 2.51E-159 dispersed
Lsi06g00071 Lsi-Chr6:628499 Lsi02g01270 Lsi-Chr2:16896971 3.30E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00071 - - csv:101219622 785.408