Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00109 ATGGCTGGTAAAGCTCAAATTCCTACCAAAAACTCAGCGCTTATTTCTATGATTGCTGATGAGGTACGCCCAATATATATCCCTATTACAACAGCTTTTCTGGATAAATCATCCACTTTTGATACGGTGGTTGGATTTCTTCTTGCTGGAGTTGGTAATGTTGACCTGCGAAGGAAAACTAACTACCTTATAGTGGACTCAAAGACAACTGTTAAACAAATTGAAGATGCTTTCAAAGAGTTCACTACAAGGGAGGATATTGCAATAGTGATGATTAGTCAATATGTTGCAAACATGATCAGGTTTCTGGTAGATAGCTATAACAAGCCAATTCCTGCAATATTGGAGATTCCTTCCAAGGATCATCCATATGACCCTGCACATGATTCAGTTCTTTCGCGCGTAAAGAACCTGTTTTCTACCGAATCAGTGGCATCTGGGAGGCGTTAA 450 39.78 MAGKAQIPTKNSALISMIADEVRPIYIPITTAFLDKSSTFDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSTESVASGRR 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1045528 1049991 - Lsi06G001090.1 Lsi06g00109 664839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00109 149 PIRSF V-ATP_synth_F 3 142 IPR005772 GO:0033180|GO:0046961|GO:1902600
Lsi06g00109 149 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 40 143 IPR005772 GO:0033180|GO:0046961|GO:1902600
Lsi06g00109 149 Pfam ATP synthase (F/14-kDa) subunit 41 135 IPR008218 GO:0034220|GO:0046961
Lsi06g00109 149 SUPERFAMILY AtpF-like 40 118 IPR036906 GO:0034220
Lsi06g00109 149 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 35 149 - -
Lsi06g00109 149 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 35 149 - -
Lsi06g00109 149 Gene3D ATPase, V1 complex, subunit F 37 141 IPR036906 GO:0034220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00109 K02151 - csv:101215239 240.35