Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00120 ATGGGTTGTGTTGTGAAGTGTGTTTTCATGATTGTTATCTTCATTTCGATGCCTTTCTCATCGCAGAAATCCCACATTTTGATTGCTAACTCACTGTTGAATACAGCAGAGAGCTTCAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTACTTGGACTCAAGAGCTTACAATTAGTAAATCAAAGCCCATCAGATCTTTCGCCTTCGCCGTCACCGTCGCCATCTCCATCACCAGCCGCCTTTGCTCCTTCTCCTGTTCCCATGGCAGCTCATCGAGTGCACATTCATGAGCATTCCCACCCTCATCAGCTTCGCTTGCACAAGAGCCGACCAGTATACAAACCTAAAAGAAAAGATCCAAGAGAAGGAAGAGTCAGAAAAATTCTTGTTGTAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCACGGAGAAGCTTTCTGTTAAGAGTGAAAGAGAAGAGAAGACAGCAAGACCAAAATCTGACCTTGATCTATTCGATCTCGGTATGCTTGGAATGGATGTTGAAGAACAGACCCATACTTCTGTAAGTGAAATGGAGTTATCTGTTCATAAAGAGGGGGAAAGGGACCAAGAGATGTTGGATTCTGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAGTGCGTATCTGATGGAACTCATTCCTCATCTGGGGATAAAGTTACTCCTGTTAAATGTTGTTCGTCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCGAATGTTCGCCTTTCAAATGCTTCGGAATCTTCTTCTGCTAATGTGATAACAAGTTCTACTTCTGTGCCAACTGTGAACTTAGCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAACTATTAACTTCTGACCAGTCGCATCTTACCCTTTCTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTTCTCATTCTGTAGGTTGCCAAAAGAATGTCCCATCTCTATCTCCACCTCCCCCACCGCCACCGCCTCCTCAAGTCACTGATCGCAGTTCATTTTCCTTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCCTCATCTCCTGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATTTGACATCACCTCAAACTGCTACTAAACCTTCATTACCATCATCTGCTATTCCTCCACCCCCTTCTCCACCACCAAGTTTGAAAACAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTTGCGTCCAAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTGCACCAGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCGTTGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAGCATATACTAGAGGCAAAAAGACTTCAGAACCTAACCATCCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGGAGTGGGTTGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACCCAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATTAGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTCTCCTTTCAACGAGTAGAAGCCATGCTTTACAGAGAAACTTTCGAAGATGAAGTGAATCATCTCCGGAATTCATTTTCCATACTAGAGGAAGCATGCAAGGAACTAAGATCCAGCAGACTCTTCCTGAAACTACTAGAAGCCGTTCTAAAAACAGGGAACAGAATGAACGTAGGAACAAGCAGAGGAGGCGCAAGAGCATTCAAACTAGACGCACTCCTAAAACTCTCCGACGTCAAAGGAACCGACGGCAAAACATCTCTACTCCACTTCGTGGTACAAGAAATGATCCGATCGGAAGGAATCAGAGTATCAGGTAGCATAATGGGGAAAATCAACCAAAAAAACAAATCAAGAACAATGGAAGAAAGAGAAAACGATTACCGAAGAATGGGGTTAGATCTGGTGTCGGGGCTGAGCACGGAACTGCAGAACGTGAAGCGAGCGGCGACGATCGATCTGAAAGTAGTTGGAAGCTCGAGGGGGAATCTGAATGAGGGAATGAGGAAAATGGAGAAACTTGTGGGGAAGGAGTTGAGTGTGGATGAAAGGAGTGGGAATTTCGTGGAAGCCATGAAAGGGTTTGTGAGCTATGTGAAGAAGAGGATGGAGGACGTGAGGAAAGACGAAGAAAGGGTAATGTCGAGTGTGAGAGAAATTACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCACTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAATGTTTGTAAGAGCTTCAAGATTGGAAGTTGA 2679 42.7 MGCVVKCVFMIVIFISMPFSSQKSHILIANSLLNTAESFNVKELERVSGEDESGGNEPFILERVRALLGLKSLQLVNQSPSDLSPSPSPSPSPSPAAFAPSPVPMAAHRVHIHEHSHPHQLRLHKSRPVYKPKRKDPREGRVRKILVVVLVSAGVTILICSIIAFWVCKKFKSQREESTEKLSVKSEREEKTARPKSDLDLFDLGMLGMDVEEQTHTSVSEMELSVHKEGERDQEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQCVSDGTHSSSGDKVTPVKCCSSDDEESFHSCGDSNLSNVRLSNASESSSANVITSSTSVPTVNLASKLEIQCDESNKLLTSDQSHLTLSPCNSEPKMQMVSHSVGCQKNVPSLSPPPPPPPPPQVTDRSSFSFSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLTSPQTATKPSLPSSAIPPPPSPPPSLKTNAYSFKTPPPPPSKLPQFMAFGKEGNLRPKLKPLHWDKVRAAPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSLKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGSGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFSFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKINQKNKSRTMEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMRKMEKLVGKELSVDERSGNFVEAMKGFVSYVKKRMEDVRKDEERVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1169294 1172740 + Lsi06G001200.1 Lsi06g00120 664850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00120 892 MobiDBLite consensus disorder prediction 84 100 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 376 391 - -
Lsi06g00120 892 Coils Coil 644 664 - -
Lsi06g00120 892 SUPERFAMILY Formin homology 2 domain (FH2 domain) 496 886 - -
Lsi06g00120 892 Gene3D Formin, FH2 domain 482 889 IPR042201 -
Lsi06g00120 892 SMART it6_source 483 890 IPR015425 -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 78 100 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 354 375 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 446 460 - -
Lsi06g00120 892 ProSiteProfiles Formin homology-2 (FH2) domain profile. 483 892 IPR015425 -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 392 445 - -
Lsi06g00120 892 PANTHER FORMIN-LIKE PROTEIN 42 403 - -
Lsi06g00120 892 PANTHER FORMIN-LIKE PROTEIN 429 889 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 113 131 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 113 136 - -
Lsi06g00120 892 PANTHER FORMIN-RELATED 42 403 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi06g00120 892 PANTHER FORMIN-RELATED 429 889 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi06g00120 892 Pfam Formin Homology 2 Domain 488 881 IPR015425 -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 354 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00120 Lsi-Chr6:1169294 Lsi11g00020 Lsi-Chr11:225806 3.90E-111 dispersed
Lsi06g00120 Lsi-Chr6:1169294 Lsi10g00514 Lsi-Chr10:7336609 9.08E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00120 - - bhj:120070661 1498.03