Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00120 ATGGGTTGTGTTGTGAAGTGTGTTTTCATGATTGTTATCTTCATTTCGATGCCTTTCTCATCGCAGAAATCCCACATTTTGATTGCTAACTCACTGTTGAATACAGCAGAGAGCTTCAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTACTTGGACTCAAGAGCTTACAATTAGTAAATCAAAGCCCATCAGATCTTTCGCCTTCGCCGTCACCGTCGCCATCTCCATCACCAGCCGCCTTTGCTCCTTCTCCTGTTCCCATGGCAGCTCATCGAGTGCACATTCATGAGCATTCCCACCCTCATCAGCTTCGCTTGCACAAGAGCCGACCAGTATACAAACCTAAAAGAAAAGATCCAAGAGAAGGAAGAGTCAGAAAAATTCTTGTTGTAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCACGGAGAAGCTTTCTGTTAAGAGTGAAAGAGAAGAGAAGACAGCAAGACCAAAATCTGACCTTGATCTATTCGATCTCGGTATGCTTGGAATGGATGTTGAAGAACAGACCCATACTTCTGTAAGTGAAATGGAGTTATCTGTTCATAAAGAGGGGGAAAGGGACCAAGAGATGTTGGATTCTGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAGTGCGTATCTGATGGAACTCATTCCTCATCTGGGGATAAAGTTACTCCTGTTAAATGTTGTTCGTCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCGAATGTTCGCCTTTCAAATGCTTCGGAATCTTCTTCTGCTAATGTGATAACAAGTTCTACTTCTGTGCCAACTGTGAACTTAGCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAACTATTAACTTCTGACCAGTCGCATCTTACCCTTTCTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTTCTCATTCTGTAGGTTGCCAAAAGAATGTCCCATCTCTATCTCCACCTCCCCCACCGCCACCGCCTCCTCAAGTCACTGATCGCAGTTCATTTTCCTTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCCTCATCTCCTGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATTTGACATCACCTCAAACTGCTACTAAACCTTCATTACCATCATCTGCTATTCCTCCACCCCCTTCTCCACCACCAAGTTTGAAAACAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTTGCGTCCAAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTGCACCAGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCGTTGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAGCATATACTAGAGGCAAAAAGACTTCAGAACCTAACCATCCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGGAGTGGGTTGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACCCAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATTAGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTCTCCTTTCAACGAGTAGAAGCCATGCTTTACAGAGAAACTTTCGAAGATGAAGTGAATCATCTCCGGAATTCATTTTCCATACTAGAGGAAGCATGCAAGGAACTAAGATCCAGCAGACTCTTCCTGAAACTACTAGAAGCCGTTCTAAAAACAGGGAACAGAATGAACGTAGGAACAAGCAGAGGAGGCGCAAGAGCATTCAAACTAGACGCACTCCTAAAACTCTCCGACGTCAAAGGAACCGACGGCAAAACATCTCTACTCCACTTCGTGGTACAAGAAATGATCCGATCGGAAGGAATCAGAGTATCAGGTAGCATAATGGGGAAAATCAACCAAAAAAACAAATCAAGAACAATGGAAGAAAGAGAAAACGATTACCGAAGAATGGGGTTAGATCTGGTGTCGGGGCTGAGCACGGAACTGCAGAACGTGAAGCGAGCGGCGACGATCGATCTGAAAGTAGTTGGAAGCTCGAGGGGGAATCTGAATGAGGGAATGAGGAAAATGGAGAAACTTGTGGGGAAGGAGTTGAGTGTGGATGAAAGGAGTGGGAATTTCGTGGAAGCCATGAAAGGGTTTGTGAGCTATGTGAAGAAGAGGATGGAGGACGTGAGGAAAGACGAAGAAAGGGTAATGTCGAGTGTGAGAGAAATTACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCACTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAATGTTTGTAAGAGCTTCAAGATTGGAAGTTGA 2679 42.7 MGCVVKCVFMIVIFISMPFSSQKSHILIANSLLNTAESFNVKELERVSGEDESGGNEPFILERVRALLGLKSLQLVNQSPSDLSPSPSPSPSPSPAAFAPSPVPMAAHRVHIHEHSHPHQLRLHKSRPVYKPKRKDPREGRVRKILVVVLVSAGVTILICSIIAFWVCKKFKSQREESTEKLSVKSEREEKTARPKSDLDLFDLGMLGMDVEEQTHTSVSEMELSVHKEGERDQEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQCVSDGTHSSSGDKVTPVKCCSSDDEESFHSCGDSNLSNVRLSNASESSSANVITSSTSVPTVNLASKLEIQCDESNKLLTSDQSHLTLSPCNSEPKMQMVSHSVGCQKNVPSLSPPPPPPPPPQVTDRSSFSFSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLTSPQTATKPSLPSSAIPPPPSPPPSLKTNAYSFKTPPPPPSKLPQFMAFGKEGNLRPKLKPLHWDKVRAAPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSLKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGSGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFSFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKINQKNKSRTMEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMRKMEKLVGKELSVDERSGNFVEAMKGFVSYVKKRMEDVRKDEERVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1169294 1172740 + Lsi06G001200.1 Lsi06g00120 664850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00120 892 MobiDBLite consensus disorder prediction 84 100 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 376 391 - -
Lsi06g00120 892 Coils Coil 644 664 - -
Lsi06g00120 892 SUPERFAMILY Formin homology 2 domain (FH2 domain) 496 886 - -
Lsi06g00120 892 Gene3D Formin, FH2 domain 482 889 IPR042201 -
Lsi06g00120 892 SMART it6_source 483 890 IPR015425 -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 78 100 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 354 375 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 446 460 - -
Lsi06g00120 892 ProSiteProfiles Formin homology-2 (FH2) domain profile. 483 892 IPR015425 -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 392 445 - -
Lsi06g00120 892 PANTHER FORMIN-LIKE PROTEIN 42 403 - -
Lsi06g00120 892 PANTHER FORMIN-LIKE PROTEIN 429 889 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 113 131 - -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 113 136 - -
Lsi06g00120 892 PANTHER FORMIN-RELATED 42 403 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi06g00120 892 PANTHER FORMIN-RELATED 429 889 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi06g00120 892 Pfam Formin Homology 2 Domain 488 881 IPR015425 -
Lsi06g00120 892 MobiDBLite consensus disorder prediction 354 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00120 - - - bhj:120070661 1498.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00120 Lsi-Chr6:1169294 Lsi11g00020 Lsi-Chr11:225806 3.90E-111 dispersed
Lsi06g00120 Lsi-Chr6:1169294 Lsi10g00514 Lsi-Chr10:7336609 9.08E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00020 . 462 942 FH2 protein (formin) Gene Family AT3G25500 66.5 3.9e-165 579.3
Lsi10g00514 . 431 887 FH2 protein (formin) Gene Family AT3G25500 60.3 2.7e-142 503.4
Lsi06g00120 . 490 887 FH2 protein (formin) Gene Family AT3G25500 51.5 1.9e-103 374.4
Lsi05g01149 . 644 1067 FH2 protein (formin) Gene Family AT2G43800 63.4 1.2e-141 501.1
Lsi10g00514 . 465 903 FH2 protein (formin) Gene Family AT2G43800 55.1 2.3e-126 450.3
Lsi10g00161 . 285 593 FH2 protein (formin) Gene Family AT4G15200 54.4 7.6e-52 201.8
Lsi04g01249 . 447 593 FH2 protein (formin) Gene Family AT4G15200 66.7 4.3e-47 186.0
Lsi04g01249 . 7 885 FH2 protein (formin) Gene Family AT5G54650 51.5 1.3e-172 604.0
Lsi10g00161 . 447 915 FH2 protein (formin) Gene Family AT5G54650 61.1 3.5e-154 542.7
Lsi05g01149 . 655 1056 FH2 protein (formin) Gene Family AT5G54650 50.8 2.8e-103 373.6
Lsi10g00514 . 31 906 FH2 protein (formin) Gene Family AT5G67470 57.6 6.2e-236 814.3
Lsi05g01149 . 636 1088 FH2 protein (formin) Gene Family AT5G67470 59.5 1.2e-135 481.1
Lsi11g00020 . 503 938 FH2 protein (formin) Gene Family AT5G67470 60.8 1.3e-129 461.1
Lsi06g00120 . 490 889 FH2 protein (formin) Gene Family AT5G67470 50.6 7.4e-104 375.6
Lsi04g00506 . 354 834 FH2 protein (formin) Gene Family AT1G59910 52.2 1.6e-125 447.6
Lsi05g01149 . 676 1057 FH2 protein (formin) Gene Family AT5G48360 52.9 3.0e-101 366.7
Lsi10g00514 . 489 864 FH2 protein (formin) Gene Family AT5G48360 50.5 9.0e-90 328.6
Lsi10g00514 . 469 863 FH2 protein (formin) Gene Family AT3G05470 52.3 2.4e-107 387.1
Lsi04g01249 . 453 868 FH2 protein (formin) Gene Family AT3G05470 50.2 1.2e-106 384.8
Lsi06g01445 CCT 21 368 FH2 protein (formin) Gene Family AT1G31810 63.2 3.7e-114 410.2
Lsi06g01444 . 1 322 FH2 protein (formin) Gene Family AT1G31810 53.5 2.8e-106 384.0
Lsi06g01445 CCT 20 374 FH2 protein (formin) Gene Family AT5G07650 68.2 5.1e-125 445.7
Lsi02g00091 CCT 995 1284 FH2 protein (formin) Gene Family AT5G07650 69.7 6.7e-109 392.1
Lsi04g02074 . 1059 1378 FH2 protein (formin) Gene Family AT5G07650 60.3 5.3e-98 355.9
Lsi06g01160 . 906 1209 FH2 protein (formin) Gene Family AT5G07650 57.8 7.2e-95 345.5
Lsi06g01445 CCT 21 367 FH2 protein (formin) Gene Family AT5G07770 65.1 1.2e-115 414.1
Lsi02g00091 CCT 909 1284 FH2 protein (formin) Gene Family AT5G07770 61.3 1.6e-115 413.7
Lsi04g02074 . 983 1370 FH2 protein (formin) Gene Family AT5G07770 54.2 1.1e-105 380.9
Lsi06g01160 . 829 1201 FH2 protein (formin) Gene Family AT5G07770 53.7 1.2e-102 370.9
Lsi04g02074 . 975 1378 FH2 protein (formin) Gene Family AT3G32400 69.9 3.6e-153 538.5
Lsi06g01160 . 836 1210 FH2 protein (formin) Gene Family AT3G32400 65.8 2.0e-135 479.6
Lsi02g00091 CCT 879 1284 FH2 protein (formin) Gene Family AT3G32400 56.3 1.9e-117 419.9
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT3G32400 63.0 4.2e-117 418.7
Lsi06g01160 . 3 1210 FH2 protein (formin) Gene Family AT2G25050 50.6 8.8e-267 917.1
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT2G25050 66.4 1.0e-121 435.3
Lsi06g01444 . 1 316 FH2 protein (formin) Gene Family AT2G25050 61.7 1.1e-112 405.2
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT5G07780 62.0 7.7e-105 377.9
Lsi02g00091 CCT 910 1284 FH2 protein (formin) Gene Family AT5G07780 55.8 1.0e-101 367.5
Lsi06g01160 . 836 1209 FH2 protein (formin) Gene Family AT5G07780 50.2 4.5e-89 325.5
Lsi06g01444 . 1 590 FH2 protein (formin) Gene Family AT5G07740 57.6 2.5e-166 583.9
Lsi06g01445 CCT 21 383 FH2 protein (formin) Gene Family AT5G07740 75.5 2.9e-143 507.3
Lsi06g01445 CCT 14 381 FH2 protein (formin) Gene Family AT5G07760 67.0 6.8e-123 438.7
Lsi02g00091 CCT 994 1284 FH2 protein (formin) Gene Family AT5G07760 69.4 1.8e-107 387.5
Lsi04g02074 . 1058 1387 FH2 protein (formin) Gene Family AT5G07760 58.4 3.8e-97 353.2
Lsi06g01160 . 905 1209 FH2 protein (formin) Gene Family AT5G07760 60.2 2.5e-96 350.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00120 Lsi_Chr06 FPKM 13.245239 15.595885 3.036371 3.230372 1.041713 0.965697 0.945267 0.819787 0.915334 0.835323