Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00122 | ATGTCCAAAATCTCAGGGTGTTCTGATGATGGTGGGAGCTTCGTTTCTGATGGTGAGAAATTAGAGAATCAGTTCAGCCATGGAAGCTCTGTATCCCATCAACACCCTCAGCTAAAAGCTCCCAAGAAGAAAAGAAACTTGGCAGGAACACCAGATCCAGATGCAGACGTGGTAGCGTTATCTCCAAAAACTCTCATGGCGACGAATCGATTCATATGTGAAATATGCAACAAGGGATTTCAAAGAGACCAAAATTTGCAACTGCACAGGCGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAACGGGAGCGAGACGAGGAGGAGGGTGTACGTGTGCCCAGAACCGTCATGTGTACACCACGACCCGGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAACATTTCAGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCTAAAAAATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACATGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGCGATGCCTTAACAGAAGAAAACAACAAATTACTATCTCATCAACTATCAACAACAATGGCTTCCACCGCCATTGATGTACCTTCCTTTCAACCTCATCTTCTTTCTCAACCCCCCGTCCTTTCACCGCCATTAACGCTGCCTCACGACCTTATGCCTATTCCTCCAAAGCCCTTAAACCTATCTGCTGGTTCCATGTTTTCATCCTCCATTTCCACCACCGACGGCCACCACTTTCCCTCCCCCTCCGCCCTCATGTCCGCCACCGCCTTGCTGCAAAAGGCGGCACAGATGGGAGCTGCCGTCAACAACGGTGGAAACTCCACTCCTTGTATGAACTCACCGATGATCCATGATAAGAAGGGTTTCGTTACAACCATGGCTCCTTCTTCCTTCTGTGGGCTATTGACTACCAACTGTTTGCAAAAATGTCAAGAAGAAAACAGTTTGTCTCAGCTACCTTCCAAAGGCAAAGTTGTGGACATGGAGATGATCGACCACATCCCGATGTTGAATGGAGTGTTCGATCAACCGCTCGTGGAGGCGGCGAGGAAGACGATGACACTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAGTATGGGGTTTGGAGGGCTTGTGGAGAATATGAGTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAAATTTGGGAGATTTGA | 1287 | 47.32 | MSKISGCSDDGGSFVSDGEKLENQFSHGSSVSHQHPQLKAPKKKRNLAGTPDPDADVVALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNGSETRRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLLSHQLSTTMASTAIDVPSFQPHLLSQPPVLSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISTTDGHHFPSPSALMSATALLQKAAQMGAAVNNGGNSTPCMNSPMIHDKKGFVTTMAPSSFCGLLTTNCLQKCQEENSLSQLPSKGKVVDMEMIDHIPMLNGVFDQPLVEAARKTMTLDLLGAEGGKGMKFQAQESMGFGGLVENMSYFRNQGAMGRQIWEI | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1182292 | 1192089 | - | Lsi06G001220.1 | Lsi06g00122 | 664852 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00122 | 428 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 11 | 326 | - | - | |
Lsi06g00122 | 428 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 176 | IPR013087 | - | |
Lsi06g00122 | 428 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 168 | IPR036236 | - | |
Lsi06g00122 | 428 | SMART | c2h2final6 | 148 | 168 | IPR013087 | - | |
Lsi06g00122 | 428 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Lsi06g00122 | 428 | SMART | c2h2final6 | 113 | 143 | IPR013087 | - | |
Lsi06g00122 | 428 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
Lsi06g00122 | 428 | Gene3D | Classic Zinc Finger | 127 | 210 | - | - | |
Lsi06g00122 | 428 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 11 | 326 | - | - | |
Lsi06g00122 | 428 | Gene3D | Classic Zinc Finger | 48 | 117 | - | - | |
Lsi06g00122 | 428 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Lsi06g00122 | 428 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
Lsi06g00122 | 428 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - | |
Lsi06g00122 | 428 | Pfam | Zinc-finger double-stranded RNA-binding | 71 | 93 | IPR022755 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02372 | Lsi-Chr2:30392161 | Lsi06g00122 | Lsi-Chr6:1182292 | 2.84E-110 | dispersed | |
Lsi06g00122 | Lsi-Chr6:1182292 | Lsi07g00216 | Lsi-Chr7:2309547 | 4.47E-104 | dispersed | |
Lsi06g00122 | Lsi-Chr6:1182292 | Lsi01g01357 | Lsi-Chr1:11741008 | 1.50E-109 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25454 | PF12171 | zf-C2H2_jaz | 6.10E-05 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00122 | - | - | csv:101206977 | 629.787 |