Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00122 ATGTCCAAAATCTCAGGGTGTTCTGATGATGGTGGGAGCTTCGTTTCTGATGGTGAGAAATTAGAGAATCAGTTCAGCCATGGAAGCTCTGTATCCCATCAACACCCTCAGCTAAAAGCTCCCAAGAAGAAAAGAAACTTGGCAGGAACACCAGATCCAGATGCAGACGTGGTAGCGTTATCTCCAAAAACTCTCATGGCGACGAATCGATTCATATGTGAAATATGCAACAAGGGATTTCAAAGAGACCAAAATTTGCAACTGCACAGGCGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAACGGGAGCGAGACGAGGAGGAGGGTGTACGTGTGCCCAGAACCGTCATGTGTACACCACGACCCGGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAACATTTCAGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCTAAAAAATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACATGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGCGATGCCTTAACAGAAGAAAACAACAAATTACTATCTCATCAACTATCAACAACAATGGCTTCCACCGCCATTGATGTACCTTCCTTTCAACCTCATCTTCTTTCTCAACCCCCCGTCCTTTCACCGCCATTAACGCTGCCTCACGACCTTATGCCTATTCCTCCAAAGCCCTTAAACCTATCTGCTGGTTCCATGTTTTCATCCTCCATTTCCACCACCGACGGCCACCACTTTCCCTCCCCCTCCGCCCTCATGTCCGCCACCGCCTTGCTGCAAAAGGCGGCACAGATGGGAGCTGCCGTCAACAACGGTGGAAACTCCACTCCTTGTATGAACTCACCGATGATCCATGATAAGAAGGGTTTCGTTACAACCATGGCTCCTTCTTCCTTCTGTGGGCTATTGACTACCAACTGTTTGCAAAAATGTCAAGAAGAAAACAGTTTGTCTCAGCTACCTTCCAAAGGCAAAGTTGTGGACATGGAGATGATCGACCACATCCCGATGTTGAATGGAGTGTTCGATCAACCGCTCGTGGAGGCGGCGAGGAAGACGATGACACTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAGTATGGGGTTTGGAGGGCTTGTGGAGAATATGAGTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAAATTTGGGAGATTTGA 1287 47.32 MSKISGCSDDGGSFVSDGEKLENQFSHGSSVSHQHPQLKAPKKKRNLAGTPDPDADVVALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNGSETRRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLLSHQLSTTMASTAIDVPSFQPHLLSQPPVLSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISTTDGHHFPSPSALMSATALLQKAAQMGAAVNNGGNSTPCMNSPMIHDKKGFVTTMAPSSFCGLLTTNCLQKCQEENSLSQLPSKGKVVDMEMIDHIPMLNGVFDQPLVEAARKTMTLDLLGAEGGKGMKFQAQESMGFGGLVENMSYFRNQGAMGRQIWEI 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1182292 1192089 - Lsi06G001220.1 Lsi06g00122 664852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00122 428 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 11 326 - -
Lsi06g00122 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
Lsi06g00122 428 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Lsi06g00122 428 SMART c2h2final6 148 168 IPR013087 -
Lsi06g00122 428 SMART c2h2final6 71 93 IPR013087 -
Lsi06g00122 428 SMART c2h2final6 113 143 IPR013087 -
Lsi06g00122 428 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lsi06g00122 428 Gene3D Classic Zinc Finger 127 210 - -
Lsi06g00122 428 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 326 - -
Lsi06g00122 428 Gene3D Classic Zinc Finger 48 117 - -
Lsi06g00122 428 MobiDBLite consensus disorder prediction 1 55 - -
Lsi06g00122 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lsi06g00122 428 MobiDBLite consensus disorder prediction 19 36 - -
Lsi06g00122 428 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02372 Lsi-Chr2:30392161 Lsi06g00122 Lsi-Chr6:1182292 2.84E-110 dispersed
Lsi06g00122 Lsi-Chr6:1182292 Lsi07g00216 Lsi-Chr7:2309547 4.47E-104 dispersed
Lsi06g00122 Lsi-Chr6:1182292 Lsi01g01357 Lsi-Chr1:11741008 1.50E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25454 PF12171 zf-C2H2_jaz 6.10E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00122 - - csv:101206977 629.787