Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00137 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCAAGCCAAATGACTGTAGGTCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGTGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAACTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAAATCATGAAGGCTGACGAGGACGTACGAATGATATCGGCCGAGGCACCTGTTCTATTTGCTAGGGCTTGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCCGTGATGGACCCAGCTATGTATGCTCCGCAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAG 783 47.77 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMPPQMWQHAQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1329161 1329943 - Lsi06G001370.1 Lsi06g00137 664867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00137 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Lsi06g00137 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Lsi06g00137 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Lsi06g00137 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Lsi06g00137 260 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982
Lsi06g00137 260 MobiDBLite consensus disorder prediction 238 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g00137 Lsi-Chr6:1329161 8.67E-86 dispersed
Lsi06g00137 Lsi-Chr6:1329161 Lsi07g00895 Lsi-Chr7:10230349 5.27E-29 dispersed
Lsi06g00137 Lsi-Chr6:1329161 Lsi06g01644 Lsi-Chr6:26741318 2.89E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25456 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00137 K08066 - csv:101209664 453.751