Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00137 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCAAGCCAAATGACTGTAGGTCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGTGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAACTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAAATCATGAAGGCTGACGAGGACGTACGAATGATATCGGCCGAGGCACCTGTTCTATTTGCTAGGGCTTGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCCGTGATGGACCCAGCTATGTATGCTCCGCAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAG 783 47.77 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMPPQMWQHAQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1329161 1329943 - Lsi06G001370.1 Lsi06g00137 664867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00137 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Lsi06g00137 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Lsi06g00137 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Lsi06g00137 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Lsi06g00137 260 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982
Lsi06g00137 260 MobiDBLite consensus disorder prediction 238 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00137 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 453.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g00137 Lsi-Chr6:1329161 8.67E-86 dispersed
Lsi06g00137 Lsi-Chr6:1329161 Lsi07g00895 Lsi-Chr7:10230349 5.27E-29 dispersed
Lsi06g00137 Lsi-Chr6:1329161 Lsi06g01644 Lsi-Chr6:26741318 2.89E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g01644 CCT,ECH 81 265 CCAAT-HAP5 Transcription Factor Family AT3G48590 90.1 3.0e-89 325.1
Lsi03g00820 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.0e-53 206.1
Lsi06g00137 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.3e-52 203.4
Lsi06g00137 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 8.1e-55 210.7
Lsi03g00820 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.9 9.6e-48 187.2
Lsi06g01644 CCT,ECH 81 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.7e-42 169.1
Lsi06g00137 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 8.4e-62 233.8
Lsi03g00820 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 1.6e-52 203.0
Lsi06g01644 CCT,ECH 81 239 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 6.7e-51 197.6
Lsi06g01644 CCT,ECH 81 238 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 1.0e-37 153.7
Lsi06g01644 CCT,ECH 81 265 CCAAT-HAP5 Transcription Factor Family AT5G63470 82.0 2.4e-81 298.9
Lsi03g00820 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Lsi06g00137 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.5e-49 191.4
Lsi03g00820 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Lsi06g00137 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.0e-50 195.3
Lsi06g01644 CCT,ECH 81 204 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.2e-50 194.5
Lsi08g00862 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 1.1e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25456 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00137 Lsi_Chr06 FPKM 8.287028 5.289637 6.164104 6.549411 6.214166 8.526688 7.346002 1.520104 2.300069 1.709206