Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00138 ATGGCATTCTCTATCTCCTTCCTCAAATCTTCCGCTCTCTTTCTCACCATTCTGTCTGTTTTCATCTTCTTCATCCTCTTCACTCCCAATCGCTCGCAGGAATTCGCATCCAGAAGGTCCCTTATCACCGCCGGCGATTCCAATTCCAGTGCCTCTTCGATCCCATCTTGTTCCTCTGTTGAATCTCACTCCGATGGCCTCGTTAACTACTTGTATTTTCATTTCTGCTTCTTCGATCAAAACCCATCTCGCTCTGTCCCTTTTCTCATTCTCTTTCTTCTCCTTCACTTCTACATCCTCATCAAAACCGCTCAAGATCACTTCTCCATTGTCACTTCCAAGCTCGCCTTTCACCTCAACTTGTCTCCCAGTATGGCCGCCGTGACGCTCTTGGCTTTGGGCAATGGCGCTCCTGATGTTTTTGCTTCTGTTGCCGCGGTTCGTGGTGGCCAGTATCGAACTGGGTTCGGTGCAATTCTCTCTGCGGGCACGTTTGTTTCGGCTTTTGTGGTTGGATTTGTGGCCATTTATGCTGCTCCGTTTTCGGTGAATCCGGCACAGTTCGTGAGGGATGTGCTGTTCTATTTGACTGCAGCATTGTTTTTGTTCTATGTGTATCTTAGCGCAGAGATTTTCTTGTGGCAAGCTGTTGGGTTTGTTGGGTTCTATCTGTTCTTTGTTGGATTGGTGTTTTGGATGGATTTGAGAATGGGAAGTGGGAAAGCTAAGAGTGGGGCTGATATGGGAGTGACTAGAGAAGCTGAGATCTACCATGGCGAGTTGCCTCAAGACTGTGAGATTGGAGAAAGCTACAGAAATGTGGATGAAGGAAAAACCAATTCTGGCTTTTGGGAAGCTCTTCGAATGGAGGTTTGGGATCAGTGCGCCTTGACGCCTCTATCTATGTTCATTCATAGAATTGGTTACTTAGTTAATCTTTTGGAAGATTTTGATGGATCGTGGGACTTGGGAAGAGGTTCGGGTGATCTGGTTAACTTAACATGGATCCCAAAAGCATGGGAAGCTCCTGTCTCGTTTCTTCTGAAGCTCACCATTCCCCAACCTGCACCTTCCGAATGGAGCAGATTCTTTACATCGGCAAATATTTGTCTCTGTCCCATTGCTCTTCTATATGCCTGTAACTCATTCATGTCGTTTAACCATCCCATTGCTTTCCTCTTGCCAAATACGCATTTACCTCTTTGGTTCGTAGTACTCTTAGCAAGCTCCTCTCTTGCAATTCTGCACTTTGTCATGGAAACTGAGCCCCCAAAAACTGAGCAAGTCCCTGTTGTGCTTGCAGCATTTGTCATGAGTGTATTTTGGATTTCGACCACGGCTGGCGAACTGCTGAACTGTCTTGCAGCTCTTGGGGTGCTTCTCAAACTCCCAGCAGCTCTACTTGGGCTTACTGTGCTTGCCTGGGGAAACTCAGTTGGGGATCTTGTGGCTGATGTTGCTCTTGCAAAAGCAGGCCAGCCCTTGCTTGCTATGGCCGGATGCTTTGCAGGGCCAATGTTTAACATGCTTGTGGGGCTTGGAACAGCTTTAGTTATACAAACAGCTAACAGTTATCCGGAGGCGTATCAGCTTCAATTTCATATCGGAATCGTCATTGCATTCGTATTCCTACTTTTCAGCCTGATGGGTTCCCTGCTTGTAATTATTTGGTGCAGATTTCGGGTGCCTCGGTTTTGGGGATTCTGCCTTGTGCTGCTGTACATTGTTTTCATGGCTGCCAGTTTACTGATGGCCAAGTTTTCTCCATGA 1770 46.89 MAFSISFLKSSALFLTILSVFIFFILFTPNRSQEFASRRSLITAGDSNSSASSIPSCSSVESHSDGLVNYLYFHFCFFDQNPSRSVPFLILFLLLHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAALFLFYVYLSAEIFLWQAVGFVGFYLFFVGLVFWMDLRMGSGKAKSGADMGVTREAEIYHGELPQDCEIGESYRNVDEGKTNSGFWEALRMEVWDQCALTPLSMFIHRIGYLVNLLEDFDGSWDLGRGSGDLVNLTWIPKAWEAPVSFLLKLTIPQPAPSEWSRFFTSANICLCPIALLYACNSFMSFNHPIAFLLPNTHLPLWFVVLLASSSLAILHFVMETEPPKTEQVPVVLAAFVMSVFWISTTAGELLNCLAALGVLLKLPAALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANSYPEAYQLQFHIGIVIAFVFLLFSLMGSLLVIIWCRFRVPRFWGFCLVLLYIVFMAASLLMAKFSP 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1338541 1342910 - Lsi06G001380.1 Lsi06g00138 664868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00138 589 Pfam Sodium/calcium exchanger protein 91 231 IPR004837 GO:0016021|GO:0055085
Lsi06g00138 589 Pfam Sodium/calcium exchanger protein 433 582 IPR004837 GO:0016021|GO:0055085
Lsi06g00138 589 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 55 241 - -
Lsi06g00138 589 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 333 588 - -
Lsi06g00138 589 Gene3D - 365 582 IPR044880 -
Lsi06g00138 589 Gene3D - 121 251 IPR044880 -
Lsi06g00138 589 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 333 588 - -
Lsi06g00138 589 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 55 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00138 Lsi-Chr6:1338541 Lsi06g00344 Lsi-Chr6:3798099 7.12E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00138 K13754 - csv:101209909 924.465