Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00150 ATGATGGCAGCTCACATCATGGAAGTTAACAACAATTCAAGAGCATCACCACCAAGAAATCACATCCATAACCACAACAATTCCAAATTCCACCAACATTACCACAGCCACAATGCCATTCTCAGCTCAAATTCCTTCCTCATTATCATTGCCTCAATCATCTCCATCACCATTCTCCTTGCCATCTTCCTCCTCATCTTCATGCTCCTCCGCCTCAAATCCGCTCGAAACACCGCCACCGCTGCCGCCTCGTCCGCCACACAATCCACCACATTCATCCCCCACACAACCATCAATTTTGATTCAAGCCCAGAAGTGAAAGGGGGTGGGTGCTTATATGGAGGCAATTCTGGGAGAATTCCTCAGTACAGAATCAGGGGAGTTCAAGTTTTCACTTATAAGGAACTGGAATTGGCTACTGACAATTTTAGTGAAGCAAATGTGATTGGAAATGGAAGATTAGGGTTTGTGTATAGAGGAGTTCTTGCAGATGGAGCTGTGGTTGCCATTAAAATGCTCCATAGAGATGGCAAGCAGAGGGAACGTTCTTTCAGAATGGAGGTGGATCTCCTAAGCCGCTTGCACTCCCCTTGTTTGGTGGAGTTGGTTGGCTACTGTGCTGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTGCATAATCCCAACAGTGAATCTCGGCCATTGGATTGGAATACTAGATTGAGGATAGCCCTTGATTGTGCCAAGGCTCTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATACATAGAAACTTCAAGTGCACCAATGTTCTACTGGATCAGGATTTCCGAGCCAAGGTGTCGGATTTTGGTTCGGCCAAGATGGGCTCTGACAAGATCAATGGTCAGATATCTACACAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACAGGTAAACTTACAACAAAGTCAGATGTGTATAGCTATGGTGTTGTGCTGCTAGAGCTATTGACCGGTCGAGTGCCGGTGGATATCAAGCGGCCGCAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTGACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCCATTCAAGGGAAGTATTCAAAAAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCCGAAGCCGACTACCGGCCTTTGATGACTGACGTCGTGCAGTCACTGTTCAAAGTAACCACTGCCTGCCCATGA 1275 46.51 MMAAHIMEVNNNSRASPPRNHIHNHNNSKFHQHYHSHNAILSSNSFLIIIASIISITILLAIFLLIFMLLRLKSARNTATAAASSATQSTTFIPHTTINFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDNFSEANVIGNGRLGFVYRGVLADGAVVAIKMLHRDGKQRERSFRMEVDLLSRLHSPCLVELVGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESRPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLFKVTTACP 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1564114 1580340 + Lsi06G001500.1 Lsi06g00150 664880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00150 424 ProSiteProfiles Protein kinase domain profile. 143 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00150 424 Pfam Protein tyrosine and serine/threonine kinase 147 416 IPR001245 GO:0004672|GO:0006468
Lsi06g00150 424 PANTHER OS01G0750732 PROTEIN 11 418 - -
Lsi06g00150 424 CDD STKc_IRAK 149 416 - -
Lsi06g00150 424 SUPERFAMILY Protein kinase-like (PK-like) 121 418 IPR011009 -
Lsi06g00150 424 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 11 418 - -
Lsi06g00150 424 Gene3D Phosphorylase Kinase; domain 1 116 218 - -
Lsi06g00150 424 Gene3D Transferase(Phosphotransferase) domain 1 219 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00755 Lsi-Chr2:6928933 Lsi06g00150 Lsi-Chr6:1564114 1.43E-142 dispersed
Lsi02g02676 Lsi-Chr2:33231910 Lsi06g00150 Lsi-Chr6:1564114 3.01E-89 dispersed
Lsi06g00150 Lsi-Chr6:1564114 Lsi09g01752 Lsi-Chr9:26197883 3.53E-102 dispersed
Lsi11g01525 Lsi-Chr11:23648953 Lsi06g00150 Lsi-Chr6:1564114 1.38E-75 dispersed
Lsi06g00150 Lsi-Chr6:1564114 Lsi06g00279 Lsi-Chr6:3176091 1.62E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83693 PF07714 PK_Tyr_Ser-Thr 8.50E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00150 - - csv:101210578 729.939