Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00168 GCTTCTTCTTTTTTCCTTCTCTCTGCTTTGATGATGGCTGGGACTAATCAAATCAATCTCAACGAGGCTAGGATGGTGGTTCCACTAAATACCTGGGTTCTCATTTCCAACTTTAAGTTGGCTTACAATCTTCTTCGTCGACCTGATGGGACCTTCAATCGCCATTTGGCAGAGTTTCTCGACAGAAAAGTCCCGGCGAATGCTAACCCGGTTGATGGGACTTTCTCGTTTGATGTCATTATCGATCGTGCTACGAGTCTGCTTTGTAGAATTTATCGACCAGCCAACGGAGGGGAACCTCAGACTACTAACATTGTTGATCTTGAGAAGCCTGTGGATTCTGAGGTTGTTGTTCCTGTTATTGTTTTCTTTCATGGTGGAAGCTTTGCACATTCGTCTGCTAACAGTGCTATCTATGATACGCTATGTCGCCGATTGGTTAGCCTTTGCAAGGCTGTTGTTGTCTCTGTGAACTACCGGCGTGCACCTGAGAATCGGTATCCATGTGCTTATGATGATGGATGGACTGCACTCAATTGGGTAAATTCAAGATCATGGCTCCAAAGTAAAGACTCGAAAACGTATATTTATTTGGCTGGCGATAGTTCGGGTGGAAATATCGTACACCATGTTGCATCAAGAGCAGTAAGGTCGGGAATCGAAGTATTGGGTAATATACTTCTGAATCCAATGTTTGGAGGACAGGAAAGAACTAAATCTGAGGTTCGATTGGATGGAAAGTATTTCGTCACCATCCGGGATAGAGATTGGTATTGGAGGGCCTTCCTCCCTGAAGGAGAAGATAGAGATCATCCAGCTTGTAATCCCTTCGGCCCGAAGGGCAATAGCCTCGAAGGAATCAAGTTCCCGAAAAGCCTTGTTGTGGTGGCTGGTTTAGATCTTGTCCAAGATTGGCAATTGGCTTATGCCAAAGGGCTGGAGAAGGATGGCCAAGAGGTGAAACTTTTGTATCTTGAGCAGGCAACAATTGGCTTCTACTTGCTACCGAACACCGAGCACTTCTATACCGTCATGGACGAGATAAGTGAATTTGTGAGTTGTGACTGTTAA 1071 45.1 ASSFFLLSALMMAGTNQINLNEARMVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVDGTFSFDVIIDRATSLLCRIYRPANGGEPQTTNIVDLEKPVDSEVVVPVIVFFHGGSFAHSSANSAIYDTLCRRLVSLCKAVVVSVNYRRAPENRYPCAYDDGWTALNWVNSRSWLQSKDSKTYIYLAGDSSGGNIVHHVASRAVRSGIEVLGNILLNPMFGGQERTKSEVRLDGKYFVTIRDRDWYWRAFLPEGEDRDHPACNPFGPKGNSLEGIKFPKSLVVVAGLDLVQDWQLAYAKGLEKDGQEVKLLYLEQATIGFYLLPNTEHFYTVMDEISEFVSCDC 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1847552 1849570 - Lsi06G001680.1 Lsi06g00168 664898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00168 356 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 121 137 IPR002168 GO:0016787
Lsi06g00168 356 Pfam alpha/beta hydrolase fold 121 333 IPR013094 GO:0016787
Lsi06g00168 356 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 196 208 IPR033140 -
Lsi06g00168 356 PANTHER ARYLACETAMIDE DEACETYLASE 14 352 - -
Lsi06g00168 356 PANTHER GIBBERELLIN RECEPTOR GID1C 14 352 - -
Lsi06g00168 356 Gene3D alpha/beta hydrolase 8 354 IPR029058 -
Lsi06g00168 356 SUPERFAMILY alpha/beta-Hydrolases 67 352 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02332 Lsi-Chr2:29946276 Lsi06g00168 Lsi-Chr6:1847552 0 dispersed
Lsi06g00168 Lsi-Chr6:1847552 Lsi08g00164 Lsi-Chr8:3369661 1.00E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00168 K14493 - csv:101213253 651.358