Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00185 ATGACACCCATTTTGAGTTACGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTGGTTTCCATTAACTTGTTTGTGGCACTTCTATGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTCTTTATTGGTCTGTTTACTGGAGTCGTCATTTTACTAGTCAGTGGTGGGAAGAGTTCGCATCTATTGCTCTTTAGTGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTTATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCACTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAAAGTTGATGCAGGAGTTGCTTTACATTTTATTGGGAGCTTCTTTTATTTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTCATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAACGTGACTGAAAGCTCAAGAGTTACCACCAATCCAGGGACATCAGTTGCTGTGAGCGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCGTTTATATCGAACTTGGCTAAAAAATCGTCAAGCGAAAAAATTACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTCTCTATTGCTCTAGCTTATCATCAGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGATACCTCAACCAAAACTCACCACCAGCATGCTATCGGACCCTGCAACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGATTCGGAGCTGGATTTTGACAGTCTCAATGTTCCTCGTCCAAGCAGTATACGAGCACTCCTTGCGACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCCTTCATGCGTCCAATGTTCGGGGGCCGGGGTTTCGTTCCCTTTGTTCCAGGATCACCAACTGAAAGGAGTGGACACTGA 1428 42.09 MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGLFTGVVILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCFIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDAGVALHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTNPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSSSEKITFREQVIIWWAGLMRGAVSIALAYHQVFGLLTKPLINCLIPQPKLTTSMLSDPATPKSFSVPLLGSAQDSELDFDSLNVPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERSGH 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1992647 2000124 - Lsi06G001850.1 Lsi06g00185 664915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00185 475 Pfam Sodium/hydrogen exchanger family 29 297 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi06g00185 475 Pfam Sodium/hydrogen exchanger family 308 368 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi06g00185 475 PANTHER SODIUM/HYDROGEN EXCHANGER 2 371 475 - -
Lsi06g00185 475 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 303 - -
Lsi06g00185 475 PANTHER SODIUM/HYDROGEN EXCHANGER 2 303 370 - -
Lsi06g00185 475 PANTHER SODIUM/HYDROGEN EXCHANGER 303 370 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi06g00185 475 Gene3D - 145 197 - -
Lsi06g00185 475 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi06g00185 475 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi06g00185 475 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi06g00185 475 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi06g00185 475 PANTHER SODIUM/HYDROGEN EXCHANGER 371 475 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi06g00185 475 PANTHER SODIUM/HYDROGEN EXCHANGER 7 303 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01865 Lsi-Chr2:24426756 Lsi06g00185 Lsi-Chr6:1992647 9.70E-135 dispersed
Lsi02g02350 Lsi-Chr2:30131308 Lsi06g00185 Lsi-Chr6:1992647 5.87E-89 dispersed
Lsi06g00185 Lsi-Chr6:1992647 Lsi09g01394 Lsi-Chr9:21975581 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00185 - - csv:101214934 840.106