Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00186 ATGGGGTGTCTGGTTAGCCGAGAGGCGTCTTCTAGAAGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGAGTGTTCAGGAGAAAGCAGTAGAGCGTGTGAGTGCTAATGTAGAGGAGCATGTAAATGTGAACAAGGAAGAGGAGCAGAAGGCAGATGGGGGTCAGGATCGCCCACCAGCAGAGCGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGCTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTCATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCAACAATCAAATTTACAGAATCTCAGGTTAAATGTTTCATGCAACAACTTCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCTGACTTTGGATTGGCTTCTTTCTTTGATCCAAATCACAAGCACCCTATGACGAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTACTTCTTGGAGCAACTGACTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCCGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGATGAGGCTGGATGGTAAAGGTCATTTTTTTAAGGAGACTCCTTGGGTGGAAAATCAGGCAAAAGAGGCTGATTGGTGGCTTTTTGGGATGACAAGACAGTTGATTGGGTGGGCTGAAAACCAAGATGGAGGGGTTGTGTCAATGTTCTTGTTCACCAAAATCAAGCTATTTTCTGGCGGGTTTCTCGAATGTGAAGCAAAGGATGCAAACTCTGGCAATGTTGATCAATCTCCGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCTCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGACATCAATCTTCCTCTACTATATCTACCAATCAGACCGAATGTTGTTGCTTCCTGTGCTTCTTCTGGGGAAGATTACAAAGCTGAGGGAAGAGCAACCGATACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAACATTGACAGAAGGCGATTAATAACACATGCTAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAAGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCATCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAATCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGATGCTCCTTCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATTCTTCCCACGGTTCATCCAAATTGGTAATCAATCAGCCTGGCCTGCTCTCAGCTGAGAAGATCATGAATTGA 1986 44.86 MGCLVSREASSRSVEAPVDKGKRNQITESRVQGESVQEKAVERVSANVEEHVNVNKEEEQKADGGQDRPPAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPTIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEMRLDGKGHFFKETPWVENQAKEADWWLFGMTRQLIGWAENQDGGVVSMFLFTKIKLFSGGFLECEAKDANSGNVDQSPVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSETSIFLYYIYQSDRMLLLPVLLLGKITKLREEQPILRAASKAQGDGAKKTRRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPIQAWSGPLVPGAGTDAPSRQKKHVGGVSSNSSHGSSKLVINQPGLLSAEKIMN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2017295 2032626 - Lsi06G001860.1 Lsi06g00186 664916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00186 661 Pfam Protein kinase domain 121 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00186 661 MobiDBLite consensus disorder prediction 13 27 - -
Lsi06g00186 661 SUPERFAMILY Protein kinase-like (PK-like) 115 341 IPR011009 -
Lsi06g00186 661 PANTHER OS01G0367700 PROTEIN 403 627 - -
Lsi06g00186 661 PANTHER OS01G0367700 PROTEIN 49 328 - -
Lsi06g00186 661 MobiDBLite consensus disorder prediction 43 79 - -
Lsi06g00186 661 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Lsi06g00186 661 MobiDBLite consensus disorder prediction 1 93 - -
Lsi06g00186 661 ProSiteProfiles Protein kinase domain profile. 121 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00186 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Lsi06g00186 661 CDD STKc_CDK9_like 121 481 - -
Lsi06g00186 661 Gene3D Transferase(Phosphotransferase) domain 1 336 485 - -
Lsi06g00186 661 Gene3D Transferase(Phosphotransferase) domain 1 204 335 - -
Lsi06g00186 661 MobiDBLite consensus disorder prediction 616 646 - -
Lsi06g00186 661 SMART serkin_6 121 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00186 661 PANTHER CELL DIVISION PROTEIN KINASE 403 627 - -
Lsi06g00186 661 PANTHER CELL DIVISION PROTEIN KINASE 49 328 - -
Lsi06g00186 661 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Lsi06g00186 661 Coils Coil 41 61 - -
Lsi06g00186 661 SUPERFAMILY Protein kinase-like (PK-like) 402 480 IPR011009 -
Lsi06g00186 661 MobiDBLite consensus disorder prediction 631 646 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00186 Lsi11g00478 CCT
Lsi06g00186 Lsi11g00478 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00186 Lsi-Chr6:2017295 Lsi05g00144 Lsi-Chr5:2112119 2.90E-38 dispersed
Lsi01g02045 Lsi-Chr1:28248718 Lsi06g00186 Lsi-Chr6:2017295 1.05E-25 transposed
Lsi11g00478 Lsi-Chr11:5048834 Lsi06g00186 Lsi-Chr6:2017295 1.26E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83695 PF00069 Pkinase 2.90E-61 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00186 K08819 - csv:101215893 639.417