Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00191 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTCTTCGAGCAGATTCTGGCCGTGCCACCGTCTTACGGCGGCGCAGGTGGTGGCGATATGGTGTCTATGCCTATGGGACTTCAACTTGGGTCCGGCGGCGGCGGAGGAATGGGTATGCCTTTGGGACTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGGTATAGAGAAGAACTTGATGGCCACAATAATAATACCAATAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAGCTTGTTTCCAACCTTTGGACATCTACAAACTCAACAACTCCGCCCACCACCGCCGTTACATCTCCACCAGCCCTTTCACAATCAGACAACTCCCATGACGGTTGCAGCCGTACCACAATCACCTCAAGTCCGTCCAAGGGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCATAGTATCGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGTATGAGTAGACTAGGAGGGGCAGGTGCGGTAGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAACAAGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGTAGCCAAATTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATTATGCCTATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAACCAGAAATGAACACTCCCTAG 939 47.82 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTNNNASSSSTASSGITERDSSMQHMTSLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVAAVPQSPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP 312
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2074144 2081437 + Lsi06G001910.1 Lsi06g00191 664921
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00191 312 MobiDBLite consensus disorder prediction 74 95 - -
Lsi06g00191 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Lsi06g00191 312 MobiDBLite consensus disorder prediction 140 161 - -
Lsi06g00191 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983
Lsi06g00191 312 Gene3D - 150 207 IPR036638 GO:0046983
Lsi06g00191 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 301 - -
Lsi06g00191 312 MobiDBLite consensus disorder prediction 72 95 - -
Lsi06g00191 312 SMART finulus 163 212 IPR011598 GO:0046983
Lsi06g00191 312 Pfam Helix-loop-helix DNA-binding domain 162 206 IPR011598 GO:0046983
Lsi06g00191 312 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 301 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02245 Lsi-Chr2:28928685 Lsi06g00191 Lsi-Chr6:2074144 7.96E-99 dispersed
Lsi06g00191 Lsi-Chr6:2074144 Lsi06g01169 Lsi-Chr6:21956891 1.84E-65 dispersed
Lsi06g00191 Lsi-Chr6:2074144 Lsi04g01455 Lsi-Chr4:22304152 1.12E-22 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25459 PF00010 HLH 6.80E-08 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00191 - - csv:101216855 512.686