Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00191 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTCTTCGAGCAGATTCTGGCCGTGCCACCGTCTTACGGCGGCGCAGGTGGTGGCGATATGGTGTCTATGCCTATGGGACTTCAACTTGGGTCCGGCGGCGGCGGAGGAATGGGTATGCCTTTGGGACTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGGTATAGAGAAGAACTTGATGGCCACAATAATAATACCAATAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAGCTTGTTTCCAACCTTTGGACATCTACAAACTCAACAACTCCGCCCACCACCGCCGTTACATCTCCACCAGCCCTTTCACAATCAGACAACTCCCATGACGGTTGCAGCCGTACCACAATCACCTCAAGTCCGTCCAAGGGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCATAGTATCGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGTATGAGTAGACTAGGAGGGGCAGGTGCGGTAGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAACAAGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGTAGCCAAATTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATTATGCCTATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAACCAGAAATGAACACTCCCTAG | 939 | 47.82 | MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTNNNASSSSTASSGITERDSSMQHMTSLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVAAVPQSPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP | 312 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2074144 | 2081437 | + | Lsi06G001910.1 | Lsi06g00191 | 664921 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00191 | 312 | MobiDBLite | consensus disorder prediction | 74 | 95 | - | - | |
| Lsi06g00191 | 312 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 157 | 206 | IPR011598 | GO:0046983 | |
| Lsi06g00191 | 312 | MobiDBLite | consensus disorder prediction | 140 | 161 | - | - | |
| Lsi06g00191 | 312 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 155 | 216 | IPR036638 | GO:0046983 | |
| Lsi06g00191 | 312 | Gene3D | - | 150 | 207 | IPR036638 | GO:0046983 | |
| Lsi06g00191 | 312 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 301 | - | - | |
| Lsi06g00191 | 312 | MobiDBLite | consensus disorder prediction | 72 | 95 | - | - | |
| Lsi06g00191 | 312 | SMART | finulus | 163 | 212 | IPR011598 | GO:0046983 | |
| Lsi06g00191 | 312 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 206 | IPR011598 | GO:0046983 | |
| Lsi06g00191 | 312 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 301 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02245 | Lsi-Chr2:28928685 | Lsi06g00191 | Lsi-Chr6:2074144 | 7.96E-99 | dispersed | |
| Lsi06g00191 | Lsi-Chr6:2074144 | Lsi06g01169 | Lsi-Chr6:21956891 | 1.84E-65 | dispersed | |
| Lsi06g00191 | Lsi-Chr6:2074144 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.12E-22 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25459 | PF00010 | HLH | 6.80E-08 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00191 | - | - | csv:101216855 | 512.686 |