Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00209 | ATGGATCCTCGCAACGACGCCGTTTACCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGACGACGACGACGAAGAGGAGGAGGAATTGAACGATGATCCTTCTCCTTCCACTTCCTCCGCTGGTGCCCTTCCTGTCCCTTCCGTCTCCACTACCGTCACCGTCGCCACTCCCGCTGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAACGCCTCGAGATTGCCACAGCCGAGCCTTTGACCTTGCAAGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACTGATGAGGATGAGATCGAGCTTTTGCAGGGTTTTTTGGATTACACGATGCAGCGTGGTACGACTCACCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGTTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGAGGACAACGCTTTAGACGATGACGAACCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGTACACGGCCTGGATCGGGAGTTAGAATGGACGGGCCGCGTCCGTCCAATGAGAATTTGAATAAAGAGAAAAACAGTACCTACCACAACAACACCAACACCAACACCAACCACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGTTGAGTACTTCCATGGGGGGAGGGCTCTGTGGTGGAGGCAGAGGGTTCAGTGGATTGGCTTTGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTTGGACGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA | 1203 | 50.71 | MDPRNDAVYPDEDLEDDEESLDDDDDDEEEEELNDDPSPSTSSAGALPVPSVSTTVTVATPAVSVVPPPSIVSISSADLIRQRLEIATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVEDNALDDDEPAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGVRMDGPRPSNENLNKEKNSTYHNNTNTNTNHNENVNNVAVAGLIEETVRSCLSPLFKELLSTSMGGGLCGGGRGFSGLALHPIPLSFGGASINFGRGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG | 400 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2356644 | 2357846 | - | Lsi06G002090.1 | Lsi06g00209 | 664939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00209 | 400 | MobiDBLite | consensus disorder prediction | 241 | 294 | - | - | |
| Lsi06g00209 | 400 | Coils | Coil | 158 | 178 | - | - | |
| Lsi06g00209 | 400 | MobiDBLite | consensus disorder prediction | 273 | 294 | - | - | |
| Lsi06g00209 | 400 | PANTHER | BNAANNG10740D PROTEIN-RELATED | 2 | 399 | IPR007592 | GO:0006355 | |
| Lsi06g00209 | 400 | PANTHER | BNAANNG10740D PROTEIN | 2 | 399 | - | - | |
| Lsi06g00209 | 400 | Coils | Coil | 374 | 394 | - | - | |
| Lsi06g00209 | 400 | Pfam | Protein of unknown function, DUF573 | 108 | 204 | IPR007592 | GO:0006355 | |
| Lsi06g00209 | 400 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Lsi06g00209 | 400 | MobiDBLite | consensus disorder prediction | 9 | 36 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00380 | Lsi-Chr1:3332849 | Lsi06g00209 | Lsi-Chr6:2356644 | 3.65E-28 | dispersed | |
| Lsi06g00209 | Lsi-Chr6:2356644 | Lsi11g01482 | Lsi-Chr11:23332273 | 3.30E-22 | dispersed | |
| Lsi10g01218 | Lsi-Chr10:16468576 | Lsi06g00209 | Lsi-Chr6:2356644 | 3.40E-06 | transposed | |
| Lsi11g00468 | Lsi-Chr11:4926684 | Lsi06g00209 | Lsi-Chr6:2356644 | 3.08E-47 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25461 | PF04504 | DUF573 | 1.40E-34 | CL0123 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00209 | - | - | csv:101219457 | 587.415 |