Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00209 ATGGATCCTCGCAACGACGCCGTTTACCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGACGACGACGACGAAGAGGAGGAGGAATTGAACGATGATCCTTCTCCTTCCACTTCCTCCGCTGGTGCCCTTCCTGTCCCTTCCGTCTCCACTACCGTCACCGTCGCCACTCCCGCTGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAACGCCTCGAGATTGCCACAGCCGAGCCTTTGACCTTGCAAGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACTGATGAGGATGAGATCGAGCTTTTGCAGGGTTTTTTGGATTACACGATGCAGCGTGGTACGACTCACCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGTTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGAGGACAACGCTTTAGACGATGACGAACCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGTACACGGCCTGGATCGGGAGTTAGAATGGACGGGCCGCGTCCGTCCAATGAGAATTTGAATAAAGAGAAAAACAGTACCTACCACAACAACACCAACACCAACACCAACCACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGTTGAGTACTTCCATGGGGGGAGGGCTCTGTGGTGGAGGCAGAGGGTTCAGTGGATTGGCTTTGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTTGGACGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1203 50.71 MDPRNDAVYPDEDLEDDEESLDDDDDDEEEEELNDDPSPSTSSAGALPVPSVSTTVTVATPAVSVVPPPSIVSISSADLIRQRLEIATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVEDNALDDDEPAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGVRMDGPRPSNENLNKEKNSTYHNNTNTNTNHNENVNNVAVAGLIEETVRSCLSPLFKELLSTSMGGGLCGGGRGFSGLALHPIPLSFGGASINFGRGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2356644 2357846 - Lsi06G002090.1 Lsi06g00209 664939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00209 400 MobiDBLite consensus disorder prediction 241 294 - -
Lsi06g00209 400 Coils Coil 158 178 - -
Lsi06g00209 400 MobiDBLite consensus disorder prediction 273 294 - -
Lsi06g00209 400 PANTHER BNAANNG10740D PROTEIN-RELATED 2 399 IPR007592 GO:0006355
Lsi06g00209 400 PANTHER BNAANNG10740D PROTEIN 2 399 - -
Lsi06g00209 400 Coils Coil 374 394 - -
Lsi06g00209 400 Pfam Protein of unknown function, DUF573 108 204 IPR007592 GO:0006355
Lsi06g00209 400 MobiDBLite consensus disorder prediction 1 49 - -
Lsi06g00209 400 MobiDBLite consensus disorder prediction 9 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00209 - - - csv:101219457 587.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00380 Lsi-Chr1:3332849 Lsi06g00209 Lsi-Chr6:2356644 3.65E-28 dispersed
Lsi06g00209 Lsi-Chr6:2356644 Lsi11g01482 Lsi-Chr11:23332273 3.30E-22 dispersed
Lsi10g01218 Lsi-Chr10:16468576 Lsi06g00209 Lsi-Chr6:2356644 3.40E-06 transposed
Lsi11g00468 Lsi-Chr11:4926684 Lsi06g00209 Lsi-Chr6:2356644 3.08E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00209 . 56 220 GeBP Transcription Factor Family AT3G04930 64.1 6.9e-46 181.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25461 PF04504 DUF573 1.40E-34 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00209 Lsi_Chr06 FPKM 0.763889 0.524224 1.268385 1.252372 3.03669 3.45097 3.634698 0.662469 0.52414 0.650617