Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00214 ATGCATGAAGTGATAGCGGAAGAGTGGGGAAGAGAAGGAATCAACGGCCATGAATGGCAGAGGAGGTGGGAAGTTGCTTTCTCTAATGGCTTCCAGAGGACTGATAATGAGGTGGTATCAGAGGCAGTGGCAACCGACATGGTTGGATCTACTGCAGTTGTAGTCGTTCTATCTGCCTGCCAGATTATTGCATCCAATTGCGGTGACTCTCGGGCGGTTCTTTGTCAAAGGAATAAAGCAATTCCATTGACAGTGGATCAAAAGCCTGACAGACAGGATGAACTCATGAGAATTGAAAGAGATGGAGGCAAAGTCATAAACTGGATGGGTGCTAGAGTGCTTGGAGTTCTTGCCATGTCAAGAGCCATAGGGGATCGATATCTTCGGCCGTGGATAATTCCGGTGCCGGAGATTAGTTTCACAACAAGGAGTGATGAGGATGAATGTTTGGTTCTAGCAAGCGATGGACTTTGGGATGTAATGACGAATGAAGAAGTTGGGCAGGTGGCTTGCCATCTTCTTAGGCGGCTTCGCAGGTCGTCGTCGACGACGACGGACGACACACCTCCAGCACAGATTGTGGCTAATAATCTCACTGAAATAGCATATGGAAGAAACAGTTCTGATAACATTTCTGTTATTGTCATCGATCTGAAAGCAAGGAGAGCAAACACACAGAGGCAATGA 687 47.16 MHEVIAEEWGREGINGHEWQRRWEVAFSNGFQRTDNEVVSEAVATDMVGSTAVVVVLSACQIIASNCGDSRAVLCQRNKAIPLTVDQKPDRQDELMRIERDGGKVINWMGARVLGVLAMSRAIGDRYLRPWIIPVPEISFTTRSDEDECLVLASDGLWDVMTNEEVGQVACHLLRRLRRSSSTTTDDTPPAQIVANNLTEIAYGRNSSDNISVIVIDLKARRANTQRQ 228
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2441048 2445630 + Lsi06G002140.1 Lsi06g00214 664944
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00214 228 CDD PP2Cc 1 218 IPR001932 -
Lsi06g00214 228 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 1 228 - -
Lsi06g00214 228 ProSiteProfiles PPM-type phosphatase domain profile. 1 218 IPR001932 -
Lsi06g00214 228 SMART PP2C_4 3 216 IPR001932 -
Lsi06g00214 228 Pfam Protein phosphatase 2C 24 211 IPR001932 -
Lsi06g00214 228 Gene3D - 1 227 IPR036457 -
Lsi06g00214 228 PANTHER ALPHABET, ISOFORM E-RELATED 1 228 - -
Lsi06g00214 228 SUPERFAMILY PP2C-like 2 219 IPR036457 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00214 Lsi-Chr6:2441048 Lsi07g00587 Lsi-Chr7:6239778 1.30E-72 dispersed
Lsi06g00214 Lsi-Chr6:2441048 Lsi02g01331 Lsi-Chr2:17811663 3.46E-61 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00214 K14497 - csv:101220173 418.698