Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00214 | ATGCATGAAGTGATAGCGGAAGAGTGGGGAAGAGAAGGAATCAACGGCCATGAATGGCAGAGGAGGTGGGAAGTTGCTTTCTCTAATGGCTTCCAGAGGACTGATAATGAGGTGGTATCAGAGGCAGTGGCAACCGACATGGTTGGATCTACTGCAGTTGTAGTCGTTCTATCTGCCTGCCAGATTATTGCATCCAATTGCGGTGACTCTCGGGCGGTTCTTTGTCAAAGGAATAAAGCAATTCCATTGACAGTGGATCAAAAGCCTGACAGACAGGATGAACTCATGAGAATTGAAAGAGATGGAGGCAAAGTCATAAACTGGATGGGTGCTAGAGTGCTTGGAGTTCTTGCCATGTCAAGAGCCATAGGGGATCGATATCTTCGGCCGTGGATAATTCCGGTGCCGGAGATTAGTTTCACAACAAGGAGTGATGAGGATGAATGTTTGGTTCTAGCAAGCGATGGACTTTGGGATGTAATGACGAATGAAGAAGTTGGGCAGGTGGCTTGCCATCTTCTTAGGCGGCTTCGCAGGTCGTCGTCGACGACGACGGACGACACACCTCCAGCACAGATTGTGGCTAATAATCTCACTGAAATAGCATATGGAAGAAACAGTTCTGATAACATTTCTGTTATTGTCATCGATCTGAAAGCAAGGAGAGCAAACACACAGAGGCAATGA | 687 | 47.16 | MHEVIAEEWGREGINGHEWQRRWEVAFSNGFQRTDNEVVSEAVATDMVGSTAVVVVLSACQIIASNCGDSRAVLCQRNKAIPLTVDQKPDRQDELMRIERDGGKVINWMGARVLGVLAMSRAIGDRYLRPWIIPVPEISFTTRSDEDECLVLASDGLWDVMTNEEVGQVACHLLRRLRRSSSTTTDDTPPAQIVANNLTEIAYGRNSSDNISVIVIDLKARRANTQRQ | 228 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2441048 | 2445630 | + | Lsi06G002140.1 | Lsi06g00214 | 664944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00214 | 228 | CDD | PP2Cc | 1 | 218 | IPR001932 | - | |
| Lsi06g00214 | 228 | PANTHER | PROTEIN PHOSPHATASE 2C 6-RELATED | 1 | 228 | - | - | |
| Lsi06g00214 | 228 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 218 | IPR001932 | - | |
| Lsi06g00214 | 228 | SMART | PP2C_4 | 3 | 216 | IPR001932 | - | |
| Lsi06g00214 | 228 | Pfam | Protein phosphatase 2C | 24 | 211 | IPR001932 | - | |
| Lsi06g00214 | 228 | Gene3D | - | 1 | 227 | IPR036457 | - | |
| Lsi06g00214 | 228 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 228 | - | - | |
| Lsi06g00214 | 228 | SUPERFAMILY | PP2C-like | 2 | 219 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g00214 | Lsi-Chr6:2441048 | Lsi07g00587 | Lsi-Chr7:6239778 | 1.30E-72 | dispersed | |
| Lsi06g00214 | Lsi-Chr6:2441048 | Lsi02g01331 | Lsi-Chr2:17811663 | 3.46E-61 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00214 | K14497 | - | csv:101220173 | 418.698 |