Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00220 ATGACGACATCTCTTTCTTCTCTTTCTCTTCTCTTTTTTCTGAAACCCATTTCCTTCTTCTTCCTCCTCCTCTGTTTCCACCATGCCAATTCCCAGCTCTACCAACAAGAACACTCTGTTTTGCTCCGACTGAACCAGTTCTGGCAAAACCAAGCCCCAATCAGCCATTGGCTCTCCTCGAATGCTTCTCATTGTACATGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTACTCTGTCTTTCTCTTACTACAATTTGAACGGAACCTTCCCCCCTTTCATTTGCGATCTCACCAATCTCACCCAACTTGATCTTCAGGTCAATTACATCACCGGTGGCTTTCCGACCACTCTTTACAATTGTTCCAAGCTTAATTACCTCGACCTCTCGCAGAATTACTTCGCCGGGTCGATTCCTGATGACGTTGACCGCTTGTCTCACCTCCAGTTTCTTAATCTCGGCGCGAACAGCTTCTCCGGCGAAATTCCGGCAACTATTTCTCGGTTGACGGAACTGCGGCACCTTTATCTTTATGTGAATAAATTCAATGGGACTTACCCATCTGAAATCGGTAACTTGTTGAATCTGGAAGAATTGTTGACGGCTTACAATTCAAATCTGCAAGCGGCTGAATTGCCTTCAAGTTTAGCACAATTGAAGAAGTTGACGTATTTATGGATGGCAGATACGAACTTAATCGGTGAAATTTCTGAATGGATTGGAAATTTGACCGCCCTCGTGAAATTGGATTTGTCGAGGAACAATTTGACTGGGAAAATCCCCAGCAGTTTGTTTACGTTGAAGAATCTCAGTGTCGTTTATCTGTTCCAGAACAATCTATCAGGAGAAATTCCTCAGAGGATTGAGTCTAAAAATATCACCGAATACGACCTATCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGCGATCTACAGGAACTGACGGCTCTGCTTCTGTTTTCAAATAAGTTATATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTAATCACAGACGTCAGATTGTTCGACAACAATTTAAACGGTACGTTGCCGCCAGATTTCGGCCGGAATTTGATCCTCGAAGGTTTTCAAGTGAATAACAATAAGCTCACCGGAAGCTTGCCGGAGCACTTATGCTCCGGCGGTAAGCTCAAAGGAGTGACTGCTCACGAGAATAATCTTAGTGGGGAGTTACCAAAATCGCTTGGGAATTGCGATAGCTTGATCATTGTCGATGTTCATGAGAACAATTTTTCAGGGGAAATTCCGGCCGGTCTATGGACGGCTCTGAATTTGACTTATGTAGTGATGAACAACAATTCTTTCACGGGCGATTTTCCTCAGAGAGTCTCAAAGAATCTTGCGAGATTGCAAATCAGTAACAACAAATTTTCAGGGGAAATTTCATCGGAGTTATCTTCATTTTGGAATTTGACTGAGTTTGAAGCAAGCAATAATCTGTTGACAGGACAAATTCCTGAACAACTCACTGCTCTTTCAAAGCTGAACAAGCTTTCACTTGATGGAAATCAACTCACTGGGGAGCTTCCAAAGAATATCATTTCATGGAGATCATTGCAGAGCCTTAAACTGAGTCGAAATCGTCTTTCTGGTGAAATACCAGACGAACTTGGTGATTTGCCGAACCTTAATGATCTCGATCTCTCGGAGAATCGACTTTCGGGGACCATTCCGACTGAGCTAGGAAAATTGAATCTGAATTTCCTTGACCTCTCTTCAAATTTTCTGTCCGGGACAATCCCATATGCATTTGAAAATGCAATCTTTGAAAAAAGCTTTTTGAACAATCCGAGTCTTTGTTCGAACAACGCAATTCTAAATCTCGATGTCTGCAGTTTGAGAACTCAGAATTCAAGAAAGATTTCATCACAGCATCTTGCTCTGATCGTAAGCTTGGGCGTAATAGTATTCATACTCTTTGTAGTTTCCGCTTTGTTCATAATCAAAATCTACAGGAAAACTGGAAACAGAGCAGATGTTGAATGGAAACTGACCTCATTTCAGAGGCTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCAGAGAACAACGTGATTGGGAGCGGTGGATCCGGGAAAGTTTACCGGATCCCGGTGAATAGTTTGGGGGAAACAGTGGCTGTGAAGAAGATATGGAACAACAGAAAGTCAGACCACAAGCTCGAGAAAGAATTCATGGCGGAAGTGAAAATCCTCAGTTCAATTCGACACAACAACATAATCAAACTCCTCTGCTGCGTTTCCTGTGAGACTTCAAGGCTTCTCGTTTACGAGTACATGGAGAAGCAAAGCCTCGATAAATGGCTACACAAGAAGAACTCACCGCCGAGAATTACAGGGTCAGATCCTATTTGCGGTGTCGCCCTTGATTGGCCGACAAGATTTCAAATTGCAGTGGGGGCAGCACAAGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCAGAATTCAACGCCAAAATAGCAGATTTTGGCTTAGCCAAGTTGCTCGTAAAGCAAGGGGAACCGGCTTCGGTCTCCGCCGTTGCCGGCTCTTTTGGATACATAGCTCCAGAGTATGCTCAGACACCAAGAATTAACGAGAAGATCGATGTATTTAGCTTTGGAGTCATTCTTCTGGAGTTGGCAACTGGAAAGGAAGCTCTCGATGGCGATGTAGACTCGTCTCTGGCAGAGTGGGCTTGGGAGTATATTCAACAAGGCAAGCCAATAGTCGATGCGTTGGATGAGGATGTGAAGGAGCCACATTATCTTGATGAAATGTGCAGTGTTTTCAAATTGGGTGTGATATGCACCTCCGGTTTGCCGACCAACCGGCCGGACATGAACCAGGCATTGCAAATCTTGATCCGCAGCCGGACCTCGGCACCCCAAAACCATGGAGATAAAAAATACGGACAGTGA 2991 44.3 MTTSLSSLSLLFFLKPISFFFLLLCFHHANSQLYQQEHSVLLRLNQFWQNQAPISHWLSSNASHCTWPEIQCTNNSVTTLSFSYYNLNGTFPPFICDLTNLTQLDLQVNYITGGFPTTLYNCSKLNYLDLSQNYFAGSIPDDVDRLSHLQFLNLGANSFSGEIPATISRLTELRHLYLYVNKFNGTYPSEIGNLLNLEELLTAYNSNLQAAELPSSLAQLKKLTYLWMADTNLIGEISEWIGNLTALVKLDLSRNNLTGKIPSSLFTLKNLSVVYLFQNNLSGEIPQRIESKNITEYDLSENNLTGRIPAAIGDLQELTALLLFSNKLYGEIPESIGRLPLITDVRLFDNNLNGTLPPDFGRNLILEGFQVNNNKLTGSLPEHLCSGGKLKGVTAHENNLSGELPKSLGNCDSLIIVDVHENNFSGEIPAGLWTALNLTYVVMNNNSFTGDFPQRVSKNLARLQISNNKFSGEISSELSSFWNLTEFEASNNLLTGQIPEQLTALSKLNKLSLDGNQLTGELPKNIISWRSLQSLKLSRNRLSGEIPDELGDLPNLNDLDLSENRLSGTIPTELGKLNLNFLDLSSNFLSGTIPYAFENAIFEKSFLNNPSLCSNNAILNLDVCSLRTQNSRKISSQHLALIVSLGVIVFILFVVSALFIIKIYRKTGNRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETVAVKKIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMEKQSLDKWLHKKNSPPRITGSDPICGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASVSAVAGSFGYIAPEYAQTPRINEKIDVFSFGVILLELATGKEALDGDVDSSLAEWAWEYIQQGKPIVDALDEDVKEPHYLDEMCSVFKLGVICTSGLPTNRPDMNQALQILIRSRTSAPQNHGDKKYGQ 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2498893 2502511 + Lsi06G002200.1 Lsi06g00220 664950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00220 996 PRINTS Leucine-rich repeat signature 553 566 - -
Lsi06g00220 996 PRINTS Leucine-rich repeat signature 247 260 - -
Lsi06g00220 996 ProSitePatterns Protein kinases ATP-binding region signature. 700 724 IPR017441 GO:0005524
Lsi06g00220 996 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Lsi06g00220 996 Pfam Leucine rich repeat 530 587 IPR001611 GO:0005515
Lsi06g00220 996 Gene3D Transferase(Phosphotransferase) domain 1 775 994 - -
Lsi06g00220 996 Gene3D Phosphorylase Kinase; domain 1 702 774 - -
Lsi06g00220 996 SUPERFAMILY RNI-like 261 616 - -
Lsi06g00220 996 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 986 - -
Lsi06g00220 996 ProSiteProfiles Protein kinase domain profile. 694 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00220 996 Pfam Leucine Rich Repeat 247 265 IPR001611 GO:0005515
Lsi06g00220 996 SUPERFAMILY Protein kinase-like (PK-like) 689 978 IPR011009 -
Lsi06g00220 996 SMART serkin_6 694 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00220 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Lsi06g00220 996 SMART LRR_typ_2 244 268 IPR003591 -
Lsi06g00220 996 SMART LRR_typ_2 146 170 IPR003591 -
Lsi06g00220 996 SMART LRR_typ_2 315 339 IPR003591 -
Lsi06g00220 996 SMART LRR_typ_2 553 577 IPR003591 -
Lsi06g00220 996 SMART LRR_typ_2 98 122 IPR003591 -
Lsi06g00220 996 SMART LRR_typ_2 505 529 IPR003591 -
Lsi06g00220 996 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 17 986 - -
Lsi06g00220 996 Pfam Protein kinase domain 696 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00220 996 Gene3D Ribonuclease Inhibitor 459 701 IPR032675 -
Lsi06g00220 996 Gene3D Ribonuclease Inhibitor 292 458 IPR032675 -
Lsi06g00220 996 Gene3D Ribonuclease Inhibitor 187 291 IPR032675 -
Lsi06g00220 996 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Lsi06g00220 996 SUPERFAMILY L domain-like 55 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00220 Lsi-Chr6:2498893 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi08g01068 Lsi-Chr8:19263751 Lsi06g00220 Lsi-Chr6:2498893 3.64E-35 dispersed
Lsi06g00220 Lsi-Chr6:2498893 Lsi08g01069 Lsi-Chr8:19264364 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83696 PF00069 Pkinase 6.70E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00220 - - csv:101214935 1712.2