Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00223 ATGGGGAGGGCGACGAGATGGTTCAAGAACTTGTTCGGGATTAAGAGAGACAAAGAACCCACAAGAGAAATTTCCAACTCCGGCATCAACAAGGAAAAAAAACCCACTTCGAATTTCACCGGCGACGCTGAACTTTGCAACAATCCGGGGACAATACCGCCGAATTTATCAGCAGCGGAAGCAGCTTGGCTGAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTAGCTGCAGCCACTGCTGCTGCAGCCGATGCGGCGGTTGCTGCAGCACAAGCCGCCGTCGCAGTGGTCCGGTTAACCAGCCATGGAAGAGGCACTATGTTCGGCGGCGGACGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGTTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGATTCATAAACGACGAAACAAGACTTGAAATCCGAGCCAGAAAATCCATGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCACTGGAAGGAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCTCGCCGGACGAACACATCGGCGTCGGAATTAAGCGATGACCCATTTCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCACGACTCTGAGTGGTGCGGCGGCGAAGACTGGCGTTTAATCTCAACGGCGCAGAGTACTCCACGATTCGTGAGCTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGCGGGGAGAATTTCTTTAAAGGGTACTTAAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGGTCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATTGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGCAGCCTTAGTGGAGTTAGAATGCAGAGATCCTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAATTTGCAGAGAAGAATATGA 1278 48.75 MGRATRWFKNLFGIKRDKEPTREISNSGINKEKKPTSNFTGDAELCNNPGTIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRVQATVRSQRTRRFINDETRLEIRARKSMERFDDTKSEHTASVHSRRLSASLDNTAFTALEGSPKIVEIDTGRPKSWSRRTNTSASELSDDPFHQTLSSPLPCRTPSRLQIPDCRNFHDSEWCGGEDWRLISTAQSTPRFVSSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFKAKLRSQSAPKQRPELGLKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2573469 2575218 + Lsi06G002230.1 Lsi06g00223 664953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00223 425 Gene3D - 117 171 - -
Lsi06g00223 425 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Lsi06g00223 425 Pfam Protein of unknown function (DUF4005) 319 390 IPR025064 -
Lsi06g00223 425 MobiDBLite consensus disorder prediction 245 272 - -
Lsi06g00223 425 ProSiteProfiles IQ motif profile. 168 195 IPR000048 GO:0005515
Lsi06g00223 425 PANTHER IQ-DOMAIN 5-RELATED 1 416 - -
Lsi06g00223 425 MobiDBLite consensus disorder prediction 249 272 - -
Lsi06g00223 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515
Lsi06g00223 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515
Lsi06g00223 425 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Lsi06g00223 425 SMART iq_5 119 141 IPR000048 GO:0005515
Lsi06g00223 425 SMART iq_5 142 163 IPR000048 GO:0005515
Lsi06g00223 425 PANTHER - 1 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02981 Lsi-Chr2:35894081 Lsi06g00223 Lsi-Chr6:2573469 1.19E-119 dispersed
Lsi05g01633 Lsi-Chr5:23981434 Lsi06g00223 Lsi-Chr6:2573469 1.33E-39 dispersed
Lsi06g00223 Lsi-Chr6:2573469 Lsi09g01300 Lsi-Chr9:20866467 6.07E-36 dispersed
Lsi11g00461 Lsi-Chr11:4806638 Lsi06g00223 Lsi-Chr6:2573469 4.76E-24 wgd
Lsi06g00223 Lsi-Chr6:2573469 Lsi07g00528 Lsi-Chr7:5630001 4.38E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00223 - - csv:101215651 678.707