Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00223 ATGGGGAGGGCGACGAGATGGTTCAAGAACTTGTTCGGGATTAAGAGAGACAAAGAACCCACAAGAGAAATTTCCAACTCCGGCATCAACAAGGAAAAAAAACCCACTTCGAATTTCACCGGCGACGCTGAACTTTGCAACAATCCGGGGACAATACCGCCGAATTTATCAGCAGCGGAAGCAGCTTGGCTGAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTAGCTGCAGCCACTGCTGCTGCAGCCGATGCGGCGGTTGCTGCAGCACAAGCCGCCGTCGCAGTGGTCCGGTTAACCAGCCATGGAAGAGGCACTATGTTCGGCGGCGGACGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGTTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGATTCATAAACGACGAAACAAGACTTGAAATCCGAGCCAGAAAATCCATGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCACTGGAAGGAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCTCGCCGGACGAACACATCGGCGTCGGAATTAAGCGATGACCCATTTCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCACGACTCTGAGTGGTGCGGCGGCGAAGACTGGCGTTTAATCTCAACGGCGCAGAGTACTCCACGATTCGTGAGCTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGCGGGGAGAATTTCTTTAAAGGGTACTTAAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGGTCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATTGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGCAGCCTTAGTGGAGTTAGAATGCAGAGATCCTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAATTTGCAGAGAAGAATATGA 1278 48.75 MGRATRWFKNLFGIKRDKEPTREISNSGINKEKKPTSNFTGDAELCNNPGTIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRVQATVRSQRTRRFINDETRLEIRARKSMERFDDTKSEHTASVHSRRLSASLDNTAFTALEGSPKIVEIDTGRPKSWSRRTNTSASELSDDPFHQTLSSPLPCRTPSRLQIPDCRNFHDSEWCGGEDWRLISTAQSTPRFVSSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFKAKLRSQSAPKQRPELGLKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2573469 2575218 + Lsi06G002230.1 Lsi06g00223 664953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00223 425 Gene3D - 117 171 - -
Lsi06g00223 425 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Lsi06g00223 425 Pfam Protein of unknown function (DUF4005) 319 390 IPR025064 -
Lsi06g00223 425 MobiDBLite consensus disorder prediction 245 272 - -
Lsi06g00223 425 ProSiteProfiles IQ motif profile. 168 195 IPR000048 GO:0005515
Lsi06g00223 425 PANTHER IQ-DOMAIN 5-RELATED 1 416 - -
Lsi06g00223 425 MobiDBLite consensus disorder prediction 249 272 - -
Lsi06g00223 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515
Lsi06g00223 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515
Lsi06g00223 425 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Lsi06g00223 425 SMART iq_5 119 141 IPR000048 GO:0005515
Lsi06g00223 425 SMART iq_5 142 163 IPR000048 GO:0005515
Lsi06g00223 425 PANTHER - 1 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00223 - - - csv:101215651 678.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02981 Lsi-Chr2:35894081 Lsi06g00223 Lsi-Chr6:2573469 1.19E-119 dispersed
Lsi05g01633 Lsi-Chr5:23981434 Lsi06g00223 Lsi-Chr6:2573469 1.33E-39 dispersed
Lsi06g00223 Lsi-Chr6:2573469 Lsi09g01300 Lsi-Chr9:20866467 6.07E-36 dispersed
Lsi11g00461 Lsi-Chr11:4806638 Lsi06g00223 Lsi-Chr6:2573469 4.76E-24 wgd
Lsi06g00223 Lsi-Chr6:2573469 Lsi07g00528 Lsi-Chr7:5630001 4.38E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g260 . . . . Bpe01g00561 . . Bma11g00541 Cmo10g00702 Cmo11g00664 . . . . Sed08g0818 Cpe04g01092 Cpe18g00396 Bhi02g01952 Tan09g1205 Cmetu04g0490 . Hepe09g0820 . . . . . . . . . . Cone16ag0724 . Cone7ag0718 Lsi06g00223 . . Cme02g00188 Blo08g00322 Blo14g00521 . . Bpe08g00502 . . . . . . Cma10g00673 Cma11g00652 Car10g00607 Car11g00535 . . . . . . . . . Cla03g01545 Cam03g1624 Cec03g1666 Cco03g1666 Clacu03g1648 Cmu03g2201 Cre03g1876 . Csa01g02871 Chy02g01166 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00645 . 23 430 IQD Protein Family AT3G22190 58.0 7.0e-97 351.3
Lsi04g01418 . 1 438 IQD Protein Family AT2G26180 61.1 3.8e-119 425.2
Lsi01g00265 . 61 334 IQD Protein Family AT2G33990 51.8 1.7e-61 233.0
Lsi07g00304 . 40 215 IQD Protein Family AT2G33990 55.9 2.0e-49 193.0
Lsi01g00265 . 61 282 IQD Protein Family AT3G15050 50.5 1.1e-55 213.8
Lsi07g00304 . 43 216 IQD Protein Family AT3G15050 62.7 5.3e-55 211.5
Lsi09g00803 . 124 471 IQD Protein Family AT5G13460 50.4 1.2e-75 280.8
Lsi06g00223 . 1 391 IQD Protein Family AT3G16490 51.0 2.9e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00223 Lsi_Chr06 FPKM 1.924503 2.33195 4.318293 5.057432 4.153651 3.233861 4.267666 8.928655 8.716787 8.587242