Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00248 | ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCGTTGACGATACCGGAGGAACCTCCTGCAAGCGAGACGCGGTTTCCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGGCAATGGCGGTGATTATTCTCCTTATTATCTTCAGGAAGCCCTAGCGGCACTCCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTATCTGGACGGGAATCGGACGTTCCGGTGGATGCTTACTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTAAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTATGCTCATCCAGGCGAGAAGGCTCGTCGGAGAGATCCGAGGAAGTATCATTATTCTGGTACGGCATGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAGGATGGAACCAACTGTCGAAGGAGAGTCTGTTTCTTTGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCTCTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCGACAGCAACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCGCTCGGCCGGTCCCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCCCTCCGGAACTTGCATCTGAGCAAGGTCAAATCCCTACCATCTTCCTGGAATGTTCAAATTGGTTCTCCTGGTTACCCATCTCGAATCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTCGAGGAGGAACCGGCTATGGAGCGAGTTGAATCGGGGAGGGAGCTGAGAGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA | 1149 | 51.78 | MIISERHRPGPVVHITPLTIPEEPPASETRFPFPLSGISVSSDGNGNGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2788692 | 2789840 | - | Lsi06G002480.1 | Lsi06g00248 | 664978 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00248 | 382 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 382 | - | - | |
| Lsi06g00248 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 159 | IPR000571 | GO:0046872 | |
| Lsi06g00248 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872 | |
| Lsi06g00248 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872 | |
| Lsi06g00248 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872 | |
| Lsi06g00248 | 382 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
| Lsi06g00248 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872 | |
| Lsi06g00248 | 382 | Gene3D | - | 134 | 198 | - | - | |
| Lsi06g00248 | 382 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
| Lsi06g00248 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 382 | IPR045234 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g00248 | Lsi-Chr6:2788692 | Lsi07g00121 | Lsi-Chr7:1360948 | 6.99E-52 | dispersed | |
| Lsi03g01206 | Lsi-Chr3:22579385 | Lsi06g00248 | Lsi-Chr6:2788692 | 3.42E-58 | transposed | |
| Lsi03g01696 | Lsi-Chr3:28284647 | Lsi06g00248 | Lsi-Chr6:2788692 | 3.22E-59 | transposed | |
| Lsi04g00984 | Lsi-Chr4:10669560 | Lsi06g00248 | Lsi-Chr6:2788692 | 2.95E-54 | transposed | |
| Lsi10g01438 | Lsi-Chr10:18464037 | Lsi06g00248 | Lsi-Chr6:2788692 | 3.39E-58 | transposed | |
| Lsi11g01705 | Lsi-Chr11:25202477 | Lsi06g00248 | Lsi-Chr6:2788692 | 6.21E-68 | transposed | |
| Lsi11g00204 | Lsi-Chr11:2077559 | Lsi06g00248 | Lsi-Chr6:2788692 | 1.13E-160 | wgd | |
| Lsi04g01443 | Lsi-Chr4:22158906 | Lsi06g00248 | Lsi-Chr6:2788692 | 9.52E-120 | wgd | |
| Lsi06g00248 | Lsi-Chr6:2788692 | Lsi08g01560 | Lsi-Chr8:23679943 | 4.00E-81 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25464 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00248 | - | - | csv:101204432 | 728.398 |