Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00265 ATGGAGAAGGGTCATCTAGATGTGGCTGGGAAAGTGGTGGTTGTCGCCATTAAAGCCACCTCGAAGGAAGTTTCTAAGGTTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAGCCTGGAGATCAGATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGGGGATTTTCTCGACTTACCAGCGATTGTGCGATTGGTCATCTGAGAACTCCTTCAGGAACTTTTTCCGATAGGAAGGATGACATTGTGCATTCATGTTCTCAGATGGTGCATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTAAGGATCAAAGTTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGATAAGAATTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAAATAAATACTAGAGAAGCTTGGATATCATCACATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTATTTCGACGAATCGATCATGTTTAGGGCTCCTAATATGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTCTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCAGATGTGGGCAGTTCATCCTTGTTCTCTGGGATTTGTGGCAGCTTGAGAAATGAATCCAGAACAGCAACCGACAGAGGGAGAAATATGTCAGGATCTGAATATGATTCTGAGAGCGAAAAGCAAACTCCCTCAGTTTCATATTTCCAGCGTTGTATGGTTGATATTATAAGTTCCAGGCGTAAATTCCAGCAACACACAATGGAAGAATCACAGAATGCTCATCATAGACCTCCGGCTCAAACACGTCAAGATCTGGTAAAAAAAATGCCTAATCTTTCTCTAGAACCTAGCACTGATGTGGCACATCGCAATACCGATATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTATCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTGTGTTCTATGTGCCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCCGAACTTGAAGTCGCTACAAGTGGGTTTGCACAAACCAATTTTTTGGCTGAGGGTGGATTTGGGTCTGTGCACCGAGGCATCTTATCAGATGGACAAGTTGTTGCTGTCAAGCAATATAAACTGGCCAGTACCCAGGGAGATCGAGAGTTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAACGTTGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTATATGGAAGAAATCGTGATCCACTGAAATGGTCTGCACGACAAAAGATTGCAGTTGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTTGAGCCACTAGTTGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGCGACCTAGCAGTAGAAACCAGAATCCTTGGGAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCCGATACATACTCGTTTGGCGTAGTCTTGCTGGAACTCGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCGCGAAACCTGTTGCGGAAAGATGCAATCTCTGAACTGGTCGATCCATGTTTGAGGAACTGTTATTCAGACGAGGAAGTTCACCGCATGCTACAATGCGCTTCCTTGTGCATCAAGCGTGATCCGTACGTAAGACCGCGTGCTTCGGGTTTTGGAGGGCGACATCGTTTTGTAAAGCAGCAGCAGCCATATAGGAAGCTTGCAGGAAAATTTTGCAGAGTTGTAACAATATATGCTCTGGAATCAACACGCAGATGGCTAAGGGGATGTTGGATTGTTTCGGGAGACGCGACGTCGGAAACTACCGTTGGAAGAAGCTCTACGTTCATTCATCCAACTGCTGTCGTACATCCGAATGCTGTAATTGGCGAGGATGGGTATATTGGTCCATTCTGTACTGTGGGAGCCTTTGCAAAGCTGGGAAATGGTTGTCAATTGTATCCTGGGAGCCACATTTTTGGCTGTACAGAACTAGGGGATCGATGTGTCCTGATGACTGGCGCTATAGTTGGTGAGGATCTTCCTGGTCGCACAGTCATTGGGTGTAATAACAAAATAGGTCACCATGCAGTGGTTGGCATTAGATGTCAAGACATGAAATACAAGGTTGGGGATGAATGTTTTCTTGATATTGGAGATAACAATGACATAAGAGAACATTCATCAATCCACCGATCATCGAAGTCCAGTGATGTGACGGCTATTGGCGATAGTAATCTCATAATGGGATCCTGTCATATTGCCCATGATTGCAAGATTGGTAACAACAATATTTTTGCAAATAATACTCTTTTAGCCGGCCACGTTGTGGTGGAGGACTATGTTCACACAGGAGGCACCACCGCAGTCCATCAATTCTGCCATGTTGGTTCTTTCTCATTTGTTGCTGCGGGTTCGATGGTTTCACAAGATGTCCCCAAATATATGATGGTCGGGGGAGAAAGACCGGAACTACGTGGTTTGAATCTAGAGGGACTTCGGCGCAATGGATTCACGGCGGAAGAGATCATTGGCTTGAGATCTGCTTACAGGAAGTTATTCATGTCTACTGATACAAATTCTAAAGGGTTGGAAGAACGTCTCAACGAAGTGGAACAGCATGAAAAGTTGGCTCACATATCTTCAGTGCATTCCATGATTCAGTCCATTCGTGCCTCATTTGAACAAAATCGTCGGGGCATTTGCAAATTCAGACTATGGAGTGGCTCTTAA 3042 44.87 MEKGHLDVAGKVVVVAIKATSKEVSKVALVWALTHVVQPGDQIKLLVVIPSHQSSKWMRGFSRLTSDCAIGHLRTPSGTFSDRKDDIVHSCSQMVHQLHGAYDPLKIKVRIKVLSGLARGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKINTREAWISSHELDVSQKCLKSYFDESIMFRAPNMTPDSTPDVESPLTVTDIGTSSISSSDVGSSSLFSGICGSLRNESRTATDRGRNMSGSEYDSESEKQTPSVSYFQRCMVDIISSRRKFQQHTMEESQNAHHRPPAQTRQDLVKKMPNLSLEPSTDVAHRNTDISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGILSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKDAISELVDPCLRNCYSDEEVHRMLQCASLCIKRDPYVRPRASGFGGRHRFVKQQQPYRKLAGKFCRVVTIYALESTRRWLRGCWIVSGDATSETTVGRSSTFIHPTAVVHPNAVIGEDGYIGPFCTVGAFAKLGNGCQLYPGSHIFGCTELGDRCVLMTGAIVGEDLPGRTVIGCNNKIGHHAVVGIRCQDMKYKVGDECFLDIGDNNDIREHSSIHRSSKSSDVTAIGDSNLIMGSCHIAHDCKIGNNNIFANNTLLAGHVVVEDYVHTGGTTAVHQFCHVGSFSFVAAGSMVSQDVPKYMMVGGERPELRGLNLEGLRRNGFTAEEIIGLRSAYRKLFMSTDTNSKGLEERLNEVEQHEKLAHISSVHSMIQSIRASFEQNRRGICKFRLWSGS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2982630 2994965 + Lsi06G002650.1 Lsi06g00265 664995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00265 1013 ProSiteProfiles Protein kinase domain profile. 395 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00265 1013 CDD LbH_UDP-GlcNAc_AT 720 1004 IPR010137 GO:0008610|GO:0008780
Lsi06g00265 1013 PANTHER OS01G0253100 PROTEIN 11 659 IPR045271 GO:0004714|GO:0006468
Lsi06g00265 1013 Gene3D - 932 1013 IPR037157 -
Lsi06g00265 1013 Pfam Bacterial transferase hexapeptide (six repeats) 845 876 IPR001451 -
Lsi06g00265 1013 PANTHER - 11 659 - -
Lsi06g00265 1013 SUPERFAMILY Trimeric LpxA-like enzymes 697 924 IPR011004 -
Lsi06g00265 1013 CDD STKc_IRAK 401 659 - -
Lsi06g00265 1013 Pfam Udp N-acetylglucosamine O-acyltransferase; Domain 2 914 1005 IPR029098 -
Lsi06g00265 1013 SUPERFAMILY Protein kinase-like (PK-like) 378 662 IPR011009 -
Lsi06g00265 1013 Gene3D Transferase(Phosphotransferase) domain 1 471 675 - -
Lsi06g00265 1013 Gene3D Phosphorylase Kinase; domain 1 366 470 - -
Lsi06g00265 1013 Gene3D Hexapeptide repeat proteins 713 931 - -
Lsi06g00265 1013 MobiDBLite consensus disorder prediction 254 276 - -
Lsi06g00265 1013 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672|GO:0006468
Lsi06g00265 1013 SMART tyrkin_6 395 667 IPR020635 GO:0004713|GO:0006468
Lsi06g00265 1013 Pfam Protein tyrosine and serine/threonine kinase 399 639 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00757 Lsi-Chr4:7044522 Lsi06g00265 Lsi-Chr6:2982630 2.98E-77 dispersed
Lsi04g01631 Lsi-Chr4:23798960 Lsi06g00265 Lsi-Chr6:2982630 5.39E-35 dispersed
Lsi06g00265 Lsi-Chr6:2982630 Lsi11g00260 Lsi-Chr11:2621815 5.80E-90 dispersed
Lsi06g00265 Lsi-Chr6:2982630 Lsi07g00562 Lsi-Chr7:5966015 1.59E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83698 PF07714 PK_Tyr_Ser-Thr 2.00E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00265 - - csv:101208373 1243.41