Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00265 | ATGGAGAAGGGTCATCTAGATGTGGCTGGGAAAGTGGTGGTTGTCGCCATTAAAGCCACCTCGAAGGAAGTTTCTAAGGTTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAGCCTGGAGATCAGATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGGGGATTTTCTCGACTTACCAGCGATTGTGCGATTGGTCATCTGAGAACTCCTTCAGGAACTTTTTCCGATAGGAAGGATGACATTGTGCATTCATGTTCTCAGATGGTGCATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTAAGGATCAAAGTTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGATAAGAATTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAAATAAATACTAGAGAAGCTTGGATATCATCACATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTATTTCGACGAATCGATCATGTTTAGGGCTCCTAATATGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTCTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCAGATGTGGGCAGTTCATCCTTGTTCTCTGGGATTTGTGGCAGCTTGAGAAATGAATCCAGAACAGCAACCGACAGAGGGAGAAATATGTCAGGATCTGAATATGATTCTGAGAGCGAAAAGCAAACTCCCTCAGTTTCATATTTCCAGCGTTGTATGGTTGATATTATAAGTTCCAGGCGTAAATTCCAGCAACACACAATGGAAGAATCACAGAATGCTCATCATAGACCTCCGGCTCAAACACGTCAAGATCTGGTAAAAAAAATGCCTAATCTTTCTCTAGAACCTAGCACTGATGTGGCACATCGCAATACCGATATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTATCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTGTGTTCTATGTGCCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCCGAACTTGAAGTCGCTACAAGTGGGTTTGCACAAACCAATTTTTTGGCTGAGGGTGGATTTGGGTCTGTGCACCGAGGCATCTTATCAGATGGACAAGTTGTTGCTGTCAAGCAATATAAACTGGCCAGTACCCAGGGAGATCGAGAGTTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAACGTTGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTATATGGAAGAAATCGTGATCCACTGAAATGGTCTGCACGACAAAAGATTGCAGTTGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTTGAGCCACTAGTTGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGCGACCTAGCAGTAGAAACCAGAATCCTTGGGAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCCGATACATACTCGTTTGGCGTAGTCTTGCTGGAACTCGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCGCGAAACCTGTTGCGGAAAGATGCAATCTCTGAACTGGTCGATCCATGTTTGAGGAACTGTTATTCAGACGAGGAAGTTCACCGCATGCTACAATGCGCTTCCTTGTGCATCAAGCGTGATCCGTACGTAAGACCGCGTGCTTCGGGTTTTGGAGGGCGACATCGTTTTGTAAAGCAGCAGCAGCCATATAGGAAGCTTGCAGGAAAATTTTGCAGAGTTGTAACAATATATGCTCTGGAATCAACACGCAGATGGCTAAGGGGATGTTGGATTGTTTCGGGAGACGCGACGTCGGAAACTACCGTTGGAAGAAGCTCTACGTTCATTCATCCAACTGCTGTCGTACATCCGAATGCTGTAATTGGCGAGGATGGGTATATTGGTCCATTCTGTACTGTGGGAGCCTTTGCAAAGCTGGGAAATGGTTGTCAATTGTATCCTGGGAGCCACATTTTTGGCTGTACAGAACTAGGGGATCGATGTGTCCTGATGACTGGCGCTATAGTTGGTGAGGATCTTCCTGGTCGCACAGTCATTGGGTGTAATAACAAAATAGGTCACCATGCAGTGGTTGGCATTAGATGTCAAGACATGAAATACAAGGTTGGGGATGAATGTTTTCTTGATATTGGAGATAACAATGACATAAGAGAACATTCATCAATCCACCGATCATCGAAGTCCAGTGATGTGACGGCTATTGGCGATAGTAATCTCATAATGGGATCCTGTCATATTGCCCATGATTGCAAGATTGGTAACAACAATATTTTTGCAAATAATACTCTTTTAGCCGGCCACGTTGTGGTGGAGGACTATGTTCACACAGGAGGCACCACCGCAGTCCATCAATTCTGCCATGTTGGTTCTTTCTCATTTGTTGCTGCGGGTTCGATGGTTTCACAAGATGTCCCCAAATATATGATGGTCGGGGGAGAAAGACCGGAACTACGTGGTTTGAATCTAGAGGGACTTCGGCGCAATGGATTCACGGCGGAAGAGATCATTGGCTTGAGATCTGCTTACAGGAAGTTATTCATGTCTACTGATACAAATTCTAAAGGGTTGGAAGAACGTCTCAACGAAGTGGAACAGCATGAAAAGTTGGCTCACATATCTTCAGTGCATTCCATGATTCAGTCCATTCGTGCCTCATTTGAACAAAATCGTCGGGGCATTTGCAAATTCAGACTATGGAGTGGCTCTTAA | 3042 | 44.87 | MEKGHLDVAGKVVVVAIKATSKEVSKVALVWALTHVVQPGDQIKLLVVIPSHQSSKWMRGFSRLTSDCAIGHLRTPSGTFSDRKDDIVHSCSQMVHQLHGAYDPLKIKVRIKVLSGLARGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKINTREAWISSHELDVSQKCLKSYFDESIMFRAPNMTPDSTPDVESPLTVTDIGTSSISSSDVGSSSLFSGICGSLRNESRTATDRGRNMSGSEYDSESEKQTPSVSYFQRCMVDIISSRRKFQQHTMEESQNAHHRPPAQTRQDLVKKMPNLSLEPSTDVAHRNTDISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGILSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKDAISELVDPCLRNCYSDEEVHRMLQCASLCIKRDPYVRPRASGFGGRHRFVKQQQPYRKLAGKFCRVVTIYALESTRRWLRGCWIVSGDATSETTVGRSSTFIHPTAVVHPNAVIGEDGYIGPFCTVGAFAKLGNGCQLYPGSHIFGCTELGDRCVLMTGAIVGEDLPGRTVIGCNNKIGHHAVVGIRCQDMKYKVGDECFLDIGDNNDIREHSSIHRSSKSSDVTAIGDSNLIMGSCHIAHDCKIGNNNIFANNTLLAGHVVVEDYVHTGGTTAVHQFCHVGSFSFVAAGSMVSQDVPKYMMVGGERPELRGLNLEGLRRNGFTAEEIIGLRSAYRKLFMSTDTNSKGLEERLNEVEQHEKLAHISSVHSMIQSIRASFEQNRRGICKFRLWSGS | 1013 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2982630 | 2994965 | + | Lsi06G002650.1 | Lsi06g00265 | 664995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00265 | 1013 | ProSiteProfiles | Protein kinase domain profile. | 395 | 668 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00265 | 1013 | CDD | LbH_UDP-GlcNAc_AT | 720 | 1004 | IPR010137 | GO:0008610|GO:0008780 | |
Lsi06g00265 | 1013 | PANTHER | OS01G0253100 PROTEIN | 11 | 659 | IPR045271 | GO:0004714|GO:0006468 | |
Lsi06g00265 | 1013 | Gene3D | - | 932 | 1013 | IPR037157 | - | |
Lsi06g00265 | 1013 | Pfam | Bacterial transferase hexapeptide (six repeats) | 845 | 876 | IPR001451 | - | |
Lsi06g00265 | 1013 | PANTHER | - | 11 | 659 | - | - | |
Lsi06g00265 | 1013 | SUPERFAMILY | Trimeric LpxA-like enzymes | 697 | 924 | IPR011004 | - | |
Lsi06g00265 | 1013 | CDD | STKc_IRAK | 401 | 659 | - | - | |
Lsi06g00265 | 1013 | Pfam | Udp N-acetylglucosamine O-acyltransferase; Domain 2 | 914 | 1005 | IPR029098 | - | |
Lsi06g00265 | 1013 | SUPERFAMILY | Protein kinase-like (PK-like) | 378 | 662 | IPR011009 | - | |
Lsi06g00265 | 1013 | Gene3D | Transferase(Phosphotransferase) domain 1 | 471 | 675 | - | - | |
Lsi06g00265 | 1013 | Gene3D | Phosphorylase Kinase; domain 1 | 366 | 470 | - | - | |
Lsi06g00265 | 1013 | Gene3D | Hexapeptide repeat proteins | 713 | 931 | - | - | |
Lsi06g00265 | 1013 | MobiDBLite | consensus disorder prediction | 254 | 276 | - | - | |
Lsi06g00265 | 1013 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 516 | 528 | IPR008266 | GO:0004672|GO:0006468 | |
Lsi06g00265 | 1013 | SMART | tyrkin_6 | 395 | 667 | IPR020635 | GO:0004713|GO:0006468 | |
Lsi06g00265 | 1013 | Pfam | Protein tyrosine and serine/threonine kinase | 399 | 639 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00757 | Lsi-Chr4:7044522 | Lsi06g00265 | Lsi-Chr6:2982630 | 2.98E-77 | dispersed | |
Lsi04g01631 | Lsi-Chr4:23798960 | Lsi06g00265 | Lsi-Chr6:2982630 | 5.39E-35 | dispersed | |
Lsi06g00265 | Lsi-Chr6:2982630 | Lsi11g00260 | Lsi-Chr11:2621815 | 5.80E-90 | dispersed | |
Lsi06g00265 | Lsi-Chr6:2982630 | Lsi07g00562 | Lsi-Chr7:5966015 | 1.59E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83698 | PF07714 | PK_Tyr_Ser-Thr | 2.00E-40 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00265 | - | - | csv:101208373 | 1243.41 |