Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00267 ATGAGGTTATCGTCCTCTGCAATTCTTGTCCTCTTTCTCTTCTTTCACCTTCTTCTCTGCTTTGCTACTTTCCCTTCCCTTTCCATTTCCCTCTTAACCGTCACTAAATCCGAGTTGGTGCCCGGCGAGATCAATGCTACTGCCGACTCTAACTCCTCGAGATCCGCCAATGATGACCACAGTTTTGCTAACATAATCGATCGGGCTCTCGAGAGGGAATTTACTGAGAATGAGCAGACTGATGAAGTCGCGGATCCTGGCAGCTTTAACAACAGCGTTGCTGAGAAGCAGGCAGTTTTGGAAACTGTTGCTCGAGTTAAGTCAAAGAAGAATGAATCGAAAGAGGAGAAATCATTTCAGTTCCATGATGTCTTCCATTTAGATAATGAGAATCGAGCAGAAGACATGCCCACATTAATTGATCGAAAGGACAATGTTTTTATTATATCCAATCCCAAGTCAAAGTATCCCGTGCTCCAATTGGATTTAAGATTGATTTCAGATCTAGTTGTTGTTATTGTTTCTGCAACTTGTGGTGGCATTGCTTTCGCTTGTGCAGGACAACCGGTCTTTACTGGATACCTGTTGGCTGGATCTCTCATTGGACCTGGAGGTTTAAGCTTTGTCAGCGAAATGGTGCAAGTTGAGACAGTTGCTCAGTTTGGTGTGATCTTCCTTCTTTTTGCATTGGGCTTGGAATTCTCCACTACAAAACTTCGTGTAGTTCGAGCAGTGGCTGTTCTTGGAGGCTTGCTCCAGATTTTCCTTTTTATGTGCTTGTGTGGAATTACAGCTTCGCTATGTGGCGGTAAATCTTCAGAGGGGGTATTTGTGGGTGCATTCTTGTCTATGTCTTCGACTGCAGTGGTCTTGAAATTTTTAATGGAACGAAATAGCGTCAATGCCATTCATGGTCAGGTGACCATTGGTACTCTTATTCTTCAGGATTGTGCTGTTGGCTTGCTGTTTGCCCTGCTTCCGATTCTTGGTGGTACTTCTGGTGTTCTTCAAGGAGTTCTGTCCATGACTAAGTCGTTGGTGGTCTTGATTACGTTTTTGATTATTTTGACAATATTATCTCGTACATGTGTTCCGAGGTTCCTTAAGCTTATGATTAGCCTGTCATCTCAGACTAATGAGCTCTATCAATTAGCAGCTGTTGCATTCTGCTTACTTGTAGCTTGGTGCAGTGATAAACTTGGCTTAAGCCTTGAATTGGGTTCCTTTGCTGCGGGTGTGATGATATCAACTACTGATCTTGCTCAGCATACACTTGAACAGGTTGAGCCCATTCGCAACTTCTTTGCTGCTCTTTTTCTTGCCAGCATTGGGATGCTAATTCATGTTCATTTCCTATGGAACCACATTGATATTTTACTTGCGGCTGTAATATTGGTCATCATTATAAAAACTGTAGTAGTTACTACTGTTGTCAAGGGATTTGGATACAACAACAAGACTTCACTTCTGGTTGGGATGTCACTCGCACAAATTGGAGAATTTGCTTTTGTCCTTCTAAGCCGTGCCTCTAATCTTCATCTTGTTGAGGGGAAATTGTATATACTGCTGCTTGGGACAACTGCACTTAGCCTGGTGACTACGCCATTGCTTTTCAAGCTTATTCCTGCTGTGGTACGTATTGGAGTGTTGTTGCGGTGGTTTTCACCTGATGGTTTGAGTGAGATTGGATTCAAAGGAGATGGCTTTCGAACAGATGGTGCCAAGCGCATTACTTTGGTGGTTCAGGACTCTCATGTTTCATGA 1764 43.14 MRLSSSAILVLFLFFHLLLCFATFPSLSISLLTVTKSELVPGEINATADSNSSRSANDDHSFANIIDRALEREFTENEQTDEVADPGSFNNSVAEKQAVLETVARVKSKKNESKEEKSFQFHDVFHLDNENRAEDMPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVFTGYLLAGSLIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMCLCGITASLCGGKSSEGVFVGAFLSMSSTAVVLKFLMERNSVNAIHGQVTIGTLILQDCAVGLLFALLPILGGTSGVLQGVLSMTKSLVVLITFLIILTILSRTCVPRFLKLMISLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHIDILLAAVILVIIIKTVVVTTVVKGFGYNNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYILLLGTTALSLVTTPLLFKLIPAVVRIGVLLRWFSPDGLSEIGFKGDGFRTDGAKRITLVVQDSHVS 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3011521 3028017 - Lsi06G002670.1 Lsi06g00267 664997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00267 587 Pfam Sodium/hydrogen exchanger family 170 539 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi06g00267 587 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 10 586 IPR045158 GO:0015386|GO:0071805|GO:1902600
Lsi06g00267 587 PANTHER K(+) EFFLUX ANTIPORTER 6 10 586 - -
Lsi06g00267 587 Gene3D - 163 546 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02021 Lsi-Chr5:27221054 Lsi06g00267 Lsi-Chr6:3011521 8.20E-37 dispersed
Lsi05g01300 Lsi-Chr5:20759125 Lsi06g00267 Lsi-Chr6:3011521 0 transposed
Lsi06g00267 Lsi-Chr6:3011521 Lsi08g01579 Lsi-Chr8:23818752 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00267 - - csv:101208614 1034.25