Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00279 | ATGGAGGAGGTTCTGATTCTTCAGCTGGTGATTCTTTGTCTCTTTATTGCTGCTAATGCTTCCAACCTTGGGGAAATTGCTGGATTCAGAAACTCTCCACCCCCTTCAATTTTTTCTGCATTTCCTCCGGTTTTAGGAACTCCTGGTCCAGTCCAACATGAAAAATCGTTGGTAAGCAATGGACCAAGCTCAGCGCCTCAGCAAAATGAGTCAACTTTGCAACCACCAGTTATGTTACCACCAATTGCTCCAGGTCCATTGCCTGTTACAATCCAAGGGTTTATACCGTCCGCTTCACCCCGTGCTCCGACCGAGTCGCCACCATTTTATACTATGCCTCAGCCACCTTTACCAGTTCAACCAAATGCACCATTGATTTCACCAAGTCCAGCTGTTTCATCATCAAATTCTCCTCTTTATCCTCCAGCAAGCTCCCCACGTGAGCAAACAAATACTTCATCAAGTTCTCGTCAAATCACTTCACCAAATGTAGCTCCAATTGCTGAGCCAATTTCTCCAGCGAGCAAGTTGCCTAAGAACTCACCTGCTAGTCATCCAGTAGTTCCTGAAAGACCTCCATCCATATTACCAGAGCCCAATATCTCTCCAGTGGTGGCTATTTCCCCAAAAGCTGGTGACAGAAAGAGATTAGAAGCACCAGCAGCTACACCTTATAATGCACTGCCCAAGTATATGCCACCTGTGAATCATTCCCCAGAAGAAGCTCCTTCCAGTCACAATGACATGGGACATTCTCACGACGCTCAACAGCCGATCCTTCCACCACAAAAAGCTCCGTTTCATAGAGTAAATCCTTCTCCAACATCTCCTCCTTTGCCCTCAAATTATAAACATCACAGAAGGAAGAATCATATCATCAGTCACGCACCTGCACCATCATATCCAATTTCCTCCCCCACGACAAAAACGCCGGGTCCAATTATTTCTACGGCACAACATTCGCCGGGAAGAGGACACCATGCTCCACCTACGGAATCAGAACCTTCACCAATATCTCCTTCACATCATGCTCCACCACCGCTTATGACTCATGTTTCACCTTCTCCTTCACCATACCAAAAAATATCTGGGCATACTAGAAGACATTTTTATCCTCCTAAAGCTTCACCGTTGAAACCTTGGGAAAAAAGCCCGAAGATGCCACCACTGCCACCAATACATACGTTGCCTCCACCACCTCCTAATGAAGATTGTTTAGCTACCCAGTGCGCCGAGCCGTATACAAATACTCCCCCAGGATCTCCCTGTGGTTGTGTTTGGCCTATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACCTTCTTCCCTCTAGTTTCAGAGCTGGCAGCGGAAATTGCTGTTGGGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTTCTTATTGATTTAGTTCCACTTGGCGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAGGTTTCGATCAAAGCTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGATCCAGGACTAGATAGTGAGCCTTATTTCAGTAATAGTAATGATGGGAGGGCAGTAAAACCAATTGGCGTCGATGTGCAGAACAGACAGCACAAAGATAGGCTAAGTGGTGGTATGATTGCCATCATTGCCCTATCAACTACTGTTGCAGTGGTCTTATGTGTTGCGACTGCTTGGATTTTGCTCTTCAAACGCAATGATGGCCTTTGTCAGCCAAAACCGACTCCACATGTTCCATTATCCTCCCTCAATAAGCCATCAGGTGCTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTATCCTTTGGATCTAGCATTGCTCCATATTCAGGATCAGCCAAGACATTCAGTGCCTCTGACATTGAGAGAGCCACCAATAATTTTGATCCTTCAAGAATATTGGGAGAGGGTGGCTTTGGACGTGTTTACAGAGGTGTTCTCGAAGATGGTACCGAAGTAGCAGTCAAAGTGCTCAAGAGAGATGATCATCAGGGTGGTCGAGAATTCTTGGCGGAAGTTGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAACGTAGCCGCTCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGATGCCCGGATCAAGATAGCACTCGGCGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGCAATATCTTGTTAGAACATGATTTTACACCAAAAGTTTCTGACTTTGGGTTGGCTAGAACTGCAATGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGGTACGTGGCACCAGAGTATGCAATGACTGGTCATCTACTTGTAAAGAGTGATGTTTATAGCTATGGAGTCGTTCTTCTTGAGTTATTAACTGGCAGGAAACCAGTAGATATGTCACAACCGCCCGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCTCTCCTCACAAGCAAAGAAGGCCTAGATGTTATTATTGACAAATCACTAGATTCTAATGTTCCTTTTGAAAATATTGCTAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTGTCACATCGACCTTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACAAGGTTCAGGAAACAAGCTCACAGGCTGGTTCGAGCCCGGAGAGTTCAACTGTTGATACGAATGATGATGAGACATCAAGTTCAAGATACATGCTAGACTCTTTTCATAGTGAATATTTAGTACCTAACTCAATTTTGGGTCTGGACGGCATCGATACACATCTCTCAATTTCTGAGCTGTTAAATACTTCAATCGGTATCGATATGCAGGAATCTAGATCGCTTGAAAGATGCCTTAGTTCCGGTCCTCTTAGAATCGGGAAAGGCAAGAGACACTTCTGGCAAAGAATGAGAAGATACTCAGGAAGTAGCATAAGTGAACATGGAATGCCTACTAAAATATGGTCAGGTTCTACCTAA | 3204 | 44.69 | MEEVLILQLVILCLFIAANASNLGEIAGFRNSPPPSIFSAFPPVLGTPGPVQHEKSLVSNGPSSAPQQNESTLQPPVMLPPIAPGPLPVTIQGFIPSASPRAPTESPPFYTMPQPPLPVQPNAPLISPSPAVSSSNSPLYPPASSPREQTNTSSSSRQITSPNVAPIAEPISPASKLPKNSPASHPVVPERPPSILPEPNISPVVAISPKAGDRKRLEAPAATPYNALPKYMPPVNHSPEEAPSSHNDMGHSHDAQQPILPPQKAPFHRVNPSPTSPPLPSNYKHHRRKNHIISHAPAPSYPISSPTTKTPGPIISTAQHSPGRGHHAPPTESEPSPISPSHHAPPPLMTHVSPSPSPYQKISGHTRRHFYPPKASPLKPWEKSPKMPPLPPIHTLPPPPPNEDCLATQCAEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAVGVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYEVLYVRYPGLPQSPPSGDPGLDSEPYFSNSNDGRAVKPIGVDVQNRQHKDRLSGGMIAIIALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVPLSSLNKPSGAGGSVMATMPSSASLSFGSSIAPYSGSAKTFSASDIERATNNFDPSRILGEGGFGRVYRGVLEDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRSLVYELIPNGSVESHLHGVDKETAPLDWDARIKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSKEGLDVIIDKSLDSNVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNKVQETSSQAGSSPESSTVDTNDDETSSSRYMLDSFHSEYLVPNSILGLDGIDTHLSISELLNTSIGIDMQESRSLERCLSSGPLRIGKGKRHFWQRMRRYSGSSISEHGMPTKIWSGST | 1067 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3176091 | 3182758 | - | Lsi06G002790.1 | Lsi06g00279 | 665009 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00279 | 1067 | SUPERFAMILY | Protein kinase-like (PK-like) | 647 | 940 | IPR011009 | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 49 | 78 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 952 | 975 | - | - | |
Lsi06g00279 | 1067 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 5 | 1066 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 333 | 353 | - | - | |
Lsi06g00279 | 1067 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 789 | 801 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g00279 | 1067 | Pfam | Protein tyrosine and serine/threonine kinase | 671 | 940 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 228 | 383 | - | - | |
Lsi06g00279 | 1067 | CDD | STKc_IRAK | 673 | 941 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 126 | 165 | - | - | |
Lsi06g00279 | 1067 | ProSiteProfiles | Protein kinase domain profile. | 667 | 943 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 101 | 125 | - | - | |
Lsi06g00279 | 1067 | Gene3D | Transferase(Phosphotransferase) domain 1 | 743 | 966 | - | - | |
Lsi06g00279 | 1067 | PANTHER | OS01G0750732 PROTEIN | 5 | 1066 | - | - | |
Lsi06g00279 | 1067 | ProSitePatterns | Protein kinases ATP-binding region signature. | 673 | 695 | IPR017441 | GO:0005524 | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 90 | 201 | - | - | |
Lsi06g00279 | 1067 | Gene3D | Phosphorylase Kinase; domain 1 | 643 | 742 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 300 | 317 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 53 | 75 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 185 | 199 | - | - | |
Lsi06g00279 | 1067 | MobiDBLite | consensus disorder prediction | 265 | 279 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00279 | Lsi-Chr6:3176091 | Lsi09g01752 | Lsi-Chr9:26197883 | 2.77E-104 | dispersed | |
Lsi02g00755 | Lsi-Chr2:6928933 | Lsi06g00279 | Lsi-Chr6:3176091 | 6.33E-102 | transposed | |
Lsi03g00191 | Lsi-Chr3:2506066 | Lsi06g00279 | Lsi-Chr6:3176091 | 7.82E-64 | transposed | |
Lsi05g01067 | Lsi-Chr5:18173193 | Lsi06g00279 | Lsi-Chr6:3176091 | 0 | transposed | |
Lsi06g00150 | Lsi-Chr6:1564114 | Lsi06g00279 | Lsi-Chr6:3176091 | 1.62E-99 | transposed | |
Lsi02g02938 | Lsi-Chr2:35531292 | Lsi06g00279 | Lsi-Chr6:3176091 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83699 | PF07714 | PK_Tyr_Ser-Thr | 3.40E-49 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00279 | - | - | bhj:120071316 | 1865.12 |