Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00279 ATGGAGGAGGTTCTGATTCTTCAGCTGGTGATTCTTTGTCTCTTTATTGCTGCTAATGCTTCCAACCTTGGGGAAATTGCTGGATTCAGAAACTCTCCACCCCCTTCAATTTTTTCTGCATTTCCTCCGGTTTTAGGAACTCCTGGTCCAGTCCAACATGAAAAATCGTTGGTAAGCAATGGACCAAGCTCAGCGCCTCAGCAAAATGAGTCAACTTTGCAACCACCAGTTATGTTACCACCAATTGCTCCAGGTCCATTGCCTGTTACAATCCAAGGGTTTATACCGTCCGCTTCACCCCGTGCTCCGACCGAGTCGCCACCATTTTATACTATGCCTCAGCCACCTTTACCAGTTCAACCAAATGCACCATTGATTTCACCAAGTCCAGCTGTTTCATCATCAAATTCTCCTCTTTATCCTCCAGCAAGCTCCCCACGTGAGCAAACAAATACTTCATCAAGTTCTCGTCAAATCACTTCACCAAATGTAGCTCCAATTGCTGAGCCAATTTCTCCAGCGAGCAAGTTGCCTAAGAACTCACCTGCTAGTCATCCAGTAGTTCCTGAAAGACCTCCATCCATATTACCAGAGCCCAATATCTCTCCAGTGGTGGCTATTTCCCCAAAAGCTGGTGACAGAAAGAGATTAGAAGCACCAGCAGCTACACCTTATAATGCACTGCCCAAGTATATGCCACCTGTGAATCATTCCCCAGAAGAAGCTCCTTCCAGTCACAATGACATGGGACATTCTCACGACGCTCAACAGCCGATCCTTCCACCACAAAAAGCTCCGTTTCATAGAGTAAATCCTTCTCCAACATCTCCTCCTTTGCCCTCAAATTATAAACATCACAGAAGGAAGAATCATATCATCAGTCACGCACCTGCACCATCATATCCAATTTCCTCCCCCACGACAAAAACGCCGGGTCCAATTATTTCTACGGCACAACATTCGCCGGGAAGAGGACACCATGCTCCACCTACGGAATCAGAACCTTCACCAATATCTCCTTCACATCATGCTCCACCACCGCTTATGACTCATGTTTCACCTTCTCCTTCACCATACCAAAAAATATCTGGGCATACTAGAAGACATTTTTATCCTCCTAAAGCTTCACCGTTGAAACCTTGGGAAAAAAGCCCGAAGATGCCACCACTGCCACCAATACATACGTTGCCTCCACCACCTCCTAATGAAGATTGTTTAGCTACCCAGTGCGCCGAGCCGTATACAAATACTCCCCCAGGATCTCCCTGTGGTTGTGTTTGGCCTATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACCTTCTTCCCTCTAGTTTCAGAGCTGGCAGCGGAAATTGCTGTTGGGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTTCTTATTGATTTAGTTCCACTTGGCGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAGGTTTCGATCAAAGCTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGATCCAGGACTAGATAGTGAGCCTTATTTCAGTAATAGTAATGATGGGAGGGCAGTAAAACCAATTGGCGTCGATGTGCAGAACAGACAGCACAAAGATAGGCTAAGTGGTGGTATGATTGCCATCATTGCCCTATCAACTACTGTTGCAGTGGTCTTATGTGTTGCGACTGCTTGGATTTTGCTCTTCAAACGCAATGATGGCCTTTGTCAGCCAAAACCGACTCCACATGTTCCATTATCCTCCCTCAATAAGCCATCAGGTGCTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTATCCTTTGGATCTAGCATTGCTCCATATTCAGGATCAGCCAAGACATTCAGTGCCTCTGACATTGAGAGAGCCACCAATAATTTTGATCCTTCAAGAATATTGGGAGAGGGTGGCTTTGGACGTGTTTACAGAGGTGTTCTCGAAGATGGTACCGAAGTAGCAGTCAAAGTGCTCAAGAGAGATGATCATCAGGGTGGTCGAGAATTCTTGGCGGAAGTTGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAACGTAGCCGCTCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGATGCCCGGATCAAGATAGCACTCGGCGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGCAATATCTTGTTAGAACATGATTTTACACCAAAAGTTTCTGACTTTGGGTTGGCTAGAACTGCAATGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGGTACGTGGCACCAGAGTATGCAATGACTGGTCATCTACTTGTAAAGAGTGATGTTTATAGCTATGGAGTCGTTCTTCTTGAGTTATTAACTGGCAGGAAACCAGTAGATATGTCACAACCGCCCGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCTCTCCTCACAAGCAAAGAAGGCCTAGATGTTATTATTGACAAATCACTAGATTCTAATGTTCCTTTTGAAAATATTGCTAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTGTCACATCGACCTTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACAAGGTTCAGGAAACAAGCTCACAGGCTGGTTCGAGCCCGGAGAGTTCAACTGTTGATACGAATGATGATGAGACATCAAGTTCAAGATACATGCTAGACTCTTTTCATAGTGAATATTTAGTACCTAACTCAATTTTGGGTCTGGACGGCATCGATACACATCTCTCAATTTCTGAGCTGTTAAATACTTCAATCGGTATCGATATGCAGGAATCTAGATCGCTTGAAAGATGCCTTAGTTCCGGTCCTCTTAGAATCGGGAAAGGCAAGAGACACTTCTGGCAAAGAATGAGAAGATACTCAGGAAGTAGCATAAGTGAACATGGAATGCCTACTAAAATATGGTCAGGTTCTACCTAA 3204 44.69 MEEVLILQLVILCLFIAANASNLGEIAGFRNSPPPSIFSAFPPVLGTPGPVQHEKSLVSNGPSSAPQQNESTLQPPVMLPPIAPGPLPVTIQGFIPSASPRAPTESPPFYTMPQPPLPVQPNAPLISPSPAVSSSNSPLYPPASSPREQTNTSSSSRQITSPNVAPIAEPISPASKLPKNSPASHPVVPERPPSILPEPNISPVVAISPKAGDRKRLEAPAATPYNALPKYMPPVNHSPEEAPSSHNDMGHSHDAQQPILPPQKAPFHRVNPSPTSPPLPSNYKHHRRKNHIISHAPAPSYPISSPTTKTPGPIISTAQHSPGRGHHAPPTESEPSPISPSHHAPPPLMTHVSPSPSPYQKISGHTRRHFYPPKASPLKPWEKSPKMPPLPPIHTLPPPPPNEDCLATQCAEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAVGVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYEVLYVRYPGLPQSPPSGDPGLDSEPYFSNSNDGRAVKPIGVDVQNRQHKDRLSGGMIAIIALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVPLSSLNKPSGAGGSVMATMPSSASLSFGSSIAPYSGSAKTFSASDIERATNNFDPSRILGEGGFGRVYRGVLEDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRSLVYELIPNGSVESHLHGVDKETAPLDWDARIKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSKEGLDVIIDKSLDSNVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNKVQETSSQAGSSPESSTVDTNDDETSSSRYMLDSFHSEYLVPNSILGLDGIDTHLSISELLNTSIGIDMQESRSLERCLSSGPLRIGKGKRHFWQRMRRYSGSSISEHGMPTKIWSGST 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3176091 3182758 - Lsi06G002790.1 Lsi06g00279 665009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00279 1067 SUPERFAMILY Protein kinase-like (PK-like) 647 940 IPR011009 -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 49 78 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 952 975 - -
Lsi06g00279 1067 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 1066 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 333 353 - -
Lsi06g00279 1067 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Lsi06g00279 1067 Pfam Protein tyrosine and serine/threonine kinase 671 940 IPR001245 GO:0004672|GO:0006468
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 228 383 - -
Lsi06g00279 1067 CDD STKc_IRAK 673 941 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 126 165 - -
Lsi06g00279 1067 ProSiteProfiles Protein kinase domain profile. 667 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 101 125 - -
Lsi06g00279 1067 Gene3D Transferase(Phosphotransferase) domain 1 743 966 - -
Lsi06g00279 1067 PANTHER OS01G0750732 PROTEIN 5 1066 - -
Lsi06g00279 1067 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 90 201 - -
Lsi06g00279 1067 Gene3D Phosphorylase Kinase; domain 1 643 742 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 300 317 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 53 75 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 185 199 - -
Lsi06g00279 1067 MobiDBLite consensus disorder prediction 265 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00279 Lsi-Chr6:3176091 Lsi09g01752 Lsi-Chr9:26197883 2.77E-104 dispersed
Lsi02g00755 Lsi-Chr2:6928933 Lsi06g00279 Lsi-Chr6:3176091 6.33E-102 transposed
Lsi03g00191 Lsi-Chr3:2506066 Lsi06g00279 Lsi-Chr6:3176091 7.82E-64 transposed
Lsi05g01067 Lsi-Chr5:18173193 Lsi06g00279 Lsi-Chr6:3176091 0 transposed
Lsi06g00150 Lsi-Chr6:1564114 Lsi06g00279 Lsi-Chr6:3176091 1.62E-99 transposed
Lsi02g02938 Lsi-Chr2:35531292 Lsi06g00279 Lsi-Chr6:3176091 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83699 PF07714 PK_Tyr_Ser-Thr 3.40E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00279 - - bhj:120071316 1865.12