Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00299 ATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCACCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAATACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTCAAGAACGCAAAGAGAGGCGCTCCGTGCTTGAAAAGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATGGAAGGATTTGGAGCGCACGGAGACTCAATATATACGGCTGAAAAGGCATAAAATTTGTGTTGATGATTTCAACCTTTTGACAATTATTGGCCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTGAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACCTTACTCATAAGGGAGGAAACTTTGACGGAAACCGTAGCGAGATTTTACGTCGCCCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACACAACTACATCCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTCGACTGCACAAATTTGTCTGCTATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGACACGGTCGATGTGGATGACAGCGTTCCAGGTAAAAAAAGTGGGAGGCGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATCAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAGAAAGGCTACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAGTTTCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGTGATGCCGAGAATAGGCTCGGTTCTGGGGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATATCGAGTGGGACAAACTCTATGACGTAGATGCGGCATTTAAGCCCGAGGTCAATGGGGAACTCGATACGCAGAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGATCCGGATCTGGACCAATTAGGAAGATGCTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTGCATCATTCATTTGATTTGACGTCAAGCACCACCCCAATTCGAACTTCGTCCGTTGACTCTACAAAAAGTGACTCGGCATTGAATAACTACTCTACCACCTACTCACCAGATGACAGAGATGCCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1614 43.43 MENHQEVEAEEEDEVGPTAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSVLEKKLASSDVSEEEQINLWKDLERTETQYIRLKRHKICVDDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSAINENEVLDDENLHDTVDVDDSVPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDIEWDKLYDVDAAFKPEVNGELDTQNFMQFDEVDPPPTRSGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFDLTSSTTPIRTSSVDSTKSDSALNNYSTTYSPDDRDAILASSGDALSQ 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3436514 3445797 + Lsi06G002990.1 Lsi06g00299 665029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00299 537 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 515 - -
Lsi06g00299 537 CDD STKc_NDR_like 104 477 - -
Lsi06g00299 537 MobiDBLite consensus disorder prediction 1 20 - -
Lsi06g00299 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 515 - -
Lsi06g00299 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi06g00299 537 SUPERFAMILY Protein kinase-like (PK-like) 87 462 IPR011009 -
Lsi06g00299 537 SMART serkin_6 106 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00299 537 MobiDBLite consensus disorder prediction 496 524 - -
Lsi06g00299 537 Gene3D Transferase(Phosphotransferase) domain 1 192 430 - -
Lsi06g00299 537 Pfam Protein kinase domain 107 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00299 537 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00299 537 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lsi06g00299 537 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00299 537 SMART pkinase_C_6 414 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi06g00299 537 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Lsi06g00299 537 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lsi06g00299 537 MobiDBLite consensus disorder prediction 496 537 - -
Lsi06g00299 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00299 Lsi-Chr6:3436514 Lsi08g01474 Lsi-Chr8:22869166 0 dispersed
Lsi02g02182 Lsi-Chr2:28306265 Lsi06g00299 Lsi-Chr6:3436514 0 transposed
Lsi06g00827 Lsi-Chr6:17574255 Lsi06g00299 Lsi-Chr6:3436514 8.85E-24 transposed
Lsi06g01506 Lsi-Chr6:25490687 Lsi06g00299 Lsi-Chr6:3436514 7.72E-61 transposed
Lsi09g00549 Lsi-Chr9:5801276 Lsi06g00299 Lsi-Chr6:3436514 1.02E-77 transposed
Lsi09g01229 Lsi-Chr9:19708524 Lsi06g00299 Lsi-Chr6:3436514 0 transposed
Lsi04g01409 Lsi-Chr4:21848408 Lsi06g00299 Lsi-Chr6:3436514 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83700 PF00069 Pkinase 5.00E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00299 K08790 - csv:101208238 988.023