Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00302 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTTCCTCAAGAAGACCAATCCATAGCGACGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGAAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTCAAAAAAATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTTAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTGGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCTGACTTCTGTTCATTCATATCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGATATTGACCTGTCATCTTACTTCAATGATGCTGGATCTCCACTTGCAACTTTCTAA 1068 41.29 MRKGGFSNNLNLKLNLPQEDQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPDFCSFISACVQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3461235 3465712 - Lsi06G003020.1 Lsi06g00302 665032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00302 355 CDD PKc_MAPKK_plant_like 69 335 - -
Lsi06g00302 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lsi06g00302 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00302 355 PANTHER MAP KINASE KINASE 9 354 - -
Lsi06g00302 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672|GO:0006468
Lsi06g00302 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672|GO:0006468
Lsi06g00302 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672|GO:0006468
Lsi06g00302 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 354 - -
Lsi06g00302 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Lsi06g00302 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Lsi06g00302 355 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00302 355 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
Lsi06g00302 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00302 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00302 Lsi11g00177 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00302 Lsi-Chr6:3461235 Lsi04g02056 Lsi-Chr4:27651323 1.77E-41 dispersed
Lsi09g01048 Lsi-Chr9:15740890 Lsi06g00302 Lsi-Chr6:3461235 2.67E-20 dispersed
Lsi02g00252 Lsi-Chr2:2139037 Lsi06g00302 Lsi-Chr6:3461235 4.38E-75 transposed
Lsi03g01358 Lsi-Chr3:24488540 Lsi06g00302 Lsi-Chr6:3461235 2.82E-79 transposed
Lsi07g00631 Lsi-Chr7:6766995 Lsi06g00302 Lsi-Chr6:3461235 2.23E-64 transposed
Lsi08g00359 Lsi-Chr8:9808183 Lsi06g00302 Lsi-Chr6:3461235 1.16E-111 transposed
Lsi11g00218 Lsi-Chr11:2223292 Lsi06g00302 Lsi-Chr6:3461235 6.08E-149 transposed
Lsi11g00177 Lsi-Chr11:1848735 Lsi06g00302 Lsi-Chr6:3461235 2.19E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83701 PF00069 Pkinase 4.70E-72 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00302 K20603 - csv:101204545 697.967