Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00302 | ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTTCCTCAAGAAGACCAATCCATAGCGACGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGAAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTCAAAAAAATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTTAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTGGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCTGACTTCTGTTCATTCATATCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGATATTGACCTGTCATCTTACTTCAATGATGCTGGATCTCCACTTGCAACTTTCTAA | 1068 | 41.29 | MRKGGFSNNLNLKLNLPQEDQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPDFCSFISACVQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3461235 | 3465712 | - | Lsi06G003020.1 | Lsi06g00302 | 665032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00302 | 355 | CDD | PKc_MAPKK_plant_like | 69 | 335 | - | - | |
Lsi06g00302 | 355 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524 | |
Lsi06g00302 | 355 | ProSiteProfiles | Protein kinase domain profile. | 71 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00302 | 355 | PANTHER | MAP KINASE KINASE | 9 | 354 | - | - | |
Lsi06g00302 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 146 | 159 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g00302 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 183 | 201 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g00302 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 249 | 271 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g00302 | 355 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 9 | 354 | - | - | |
Lsi06g00302 | 355 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 351 | - | - | |
Lsi06g00302 | 355 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g00302 | 355 | SMART | serkin_6 | 71 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00302 | 355 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 337 | IPR011009 | - | |
Lsi06g00302 | 355 | Pfam | Protein kinase domain | 73 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00302 | 355 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 150 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi06g00302 | Lsi11g00177 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00302 | Lsi-Chr6:3461235 | Lsi04g02056 | Lsi-Chr4:27651323 | 1.77E-41 | dispersed | |
Lsi09g01048 | Lsi-Chr9:15740890 | Lsi06g00302 | Lsi-Chr6:3461235 | 2.67E-20 | dispersed | |
Lsi02g00252 | Lsi-Chr2:2139037 | Lsi06g00302 | Lsi-Chr6:3461235 | 4.38E-75 | transposed | |
Lsi03g01358 | Lsi-Chr3:24488540 | Lsi06g00302 | Lsi-Chr6:3461235 | 2.82E-79 | transposed | |
Lsi07g00631 | Lsi-Chr7:6766995 | Lsi06g00302 | Lsi-Chr6:3461235 | 2.23E-64 | transposed | |
Lsi08g00359 | Lsi-Chr8:9808183 | Lsi06g00302 | Lsi-Chr6:3461235 | 1.16E-111 | transposed | |
Lsi11g00218 | Lsi-Chr11:2223292 | Lsi06g00302 | Lsi-Chr6:3461235 | 6.08E-149 | transposed | |
Lsi11g00177 | Lsi-Chr11:1848735 | Lsi06g00302 | Lsi-Chr6:3461235 | 2.19E-175 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83701 | PF00069 | Pkinase | 4.70E-72 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00302 | K20603 | - | csv:101204545 | 697.967 |