Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00302 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTTCCTCAAGAAGACCAATCCATAGCGACGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGAAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTCAAAAAAATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTTAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTGGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCTGACTTCTGTTCATTCATATCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGATATTGACCTGTCATCTTACTTCAATGATGCTGGATCTCCACTTGCAACTTTCTAA 1068 41.29 MRKGGFSNNLNLKLNLPQEDQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPDFCSFISACVQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3461235 3465712 - Lsi06G003020.1 Lsi06g00302 665032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00302 355 CDD PKc_MAPKK_plant_like 69 335 - -
Lsi06g00302 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lsi06g00302 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00302 355 PANTHER MAP KINASE KINASE 9 354 - -
Lsi06g00302 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672|GO:0006468
Lsi06g00302 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672|GO:0006468
Lsi06g00302 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672|GO:0006468
Lsi06g00302 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 354 - -
Lsi06g00302 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Lsi06g00302 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Lsi06g00302 355 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00302 355 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
Lsi06g00302 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00302 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00302 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101204545 697.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi06g00302 Lsi11g00177 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00302 Lsi-Chr6:3461235 Lsi04g02056 Lsi-Chr4:27651323 1.77E-41 dispersed
Lsi09g01048 Lsi-Chr9:15740890 Lsi06g00302 Lsi-Chr6:3461235 2.67E-20 dispersed
Lsi02g00252 Lsi-Chr2:2139037 Lsi06g00302 Lsi-Chr6:3461235 4.38E-75 transposed
Lsi03g01358 Lsi-Chr3:24488540 Lsi06g00302 Lsi-Chr6:3461235 2.82E-79 transposed
Lsi07g00631 Lsi-Chr7:6766995 Lsi06g00302 Lsi-Chr6:3461235 2.23E-64 transposed
Lsi08g00359 Lsi-Chr8:9808183 Lsi06g00302 Lsi-Chr6:3461235 1.16E-111 transposed
Lsi11g00218 Lsi-Chr11:2223292 Lsi06g00302 Lsi-Chr6:3461235 6.08E-149 transposed
Lsi11g00177 Lsi-Chr11:1848735 Lsi06g00302 Lsi-Chr6:3461235 2.19E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00302 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 1.6e-136 482.6
Lsi11g00177 CCT 27 410 MAP Kinase Kinase Gene Family AT4G26070 56.2 1.6e-115 412.9
Lsi11g00218 . 26 332 MAP Kinase Kinase Gene Family AT4G26070 52.9 3.9e-98 355.1
Lsi06g00302 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 2.2e-133 472.2
Lsi11g00177 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 63.3 3.4e-110 395.2
Lsi11g00218 . 10 312 MAP Kinase Kinase Gene Family AT4G29810 59.4 6.2e-104 374.4
Lsi03g01358 . 36 486 MAP Kinase Kinase Gene Family AT5G40440 73.9 5.8e-207 717.2
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 70.8 8.7e-128 453.8
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT3G21220 69.6 4.0e-130 461.5
Lsi02g00252 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.5e-84 309.3
Lsi11g00218 . 1 335 MAP Kinase Kinase Gene Family AT5G56580 79.7 2.4e-159 558.5
Lsi08g00359 . 5 335 MAP Kinase Kinase Gene Family AT5G56580 64.6 1.9e-119 426.0
Lsi06g00302 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 2.5e-119 425.6
Lsi02g00252 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.3 9.9e-109 390.2
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.9e-76 282.3
Lsi02g00252 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 9.8e-82 300.4
Lsi02g00252 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.2e-114 409.8
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G73500 52.5 4.5e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83701 PF00069 Pkinase 4.70E-72 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00302 Lsi_Chr06 FPKM 5.792966 6.409207 20.442314 19.404596 12.506558 14.065571 12.34248 0.663381 0.489354 0.520001