Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00306 | ATGAGTGGACCAGTTAACATCATTGTAGGTTCTCATGTCTGGATTGAAGATCCAAAACTAGCTTGGATTGATGGTGAAGTTTTCCGCATCAATGGCGAGGAAGTTCACGTCCGGGCTACCAATGGGAAAACAGTTGTTACTAATATATCAAAGATATTCCCCAAGGATACAGAAGCACCTGCTGCAGGTGTAGATGACATGACAAAGCTGTCATACTTGCATGAACCTGGAGTTCTGAGCAACTTGGCGACCAGATATGAACTCAACGAAATCTATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGGTTACCTCATCTTTATGATACTCACATGATGGAACAATACAAAGGAGCTGGATTTGGAGAACTAAGTCCTCATGTCTTTGCAGTTGCTGAAGTAGCATACAGGGCAATGATTAATGAAGGAAAGAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACCGAGACCACGAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGATCTGGAGTGGAAGGGCGAACTGTTGAACAACAAGTCCTAGAATCCAATCCTGTTCTTGAAGCATTTGGAAATGCAAAAACTGTTAGGAACAATAATTCAAGTCGCTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATATCTGGGGCAGCTGTCCGAACTTATTTGCTTGAAAGGTCTCGAGTATGTCAGATCTCAGATCCTGAAAGAAATTATCATTGCTTTTACCTTCTCTGCGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAATTAACAGACCCTAAATCGTTCCACTACTTAAATCAATCTAAGTGTTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACAAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAGGCAATTTTTAGGGTTGTAGCTGCAATTTTGCATCTTGGAAATATTGAATTTGCAAAGGGAGAGGAGATTGATTCTTCAGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACTGCCGAACTGCTTAAGTGTGATGCAAAGAGTTTGGAAGATGCACTGATTCAACGTGTTATGGTAACGCCAGAAGAGGTTATAACTCGAACTCTTGATCCTGTGGCTGCTTTGGGTAGTAGGGACGCCTTGGCTAAAACGATTTATTCACGACTCTTTGATTGGCTCGTGGAGAAGATTAACAATTCAATTGGACAAGACCCAAATTCTAAATCATTGATTGGAGTTCTAGATATTTATGGATTTGAGAGTTTTAAACTCAACAGTTTTGAACAGTTCTGCATCAATTTTACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAGGAAATCAATTGGAGTTATATTGAGTTCGTTGATAACCAGGATGTCTTGGATCTGATTGAAAAGAAACCAGGAGGAATTATCGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCCACACACGAAACATTTGCTCAGAAGTTATACCAGACTTTCAAGAACAACAAGCGCTTCATTAAGCCTAAGCTATCTCGTACTAGTTTTACGATATCTCACTATGCTGGAGAGGTGAATTTAAGCTTGTTTCTTAGTTTCTTATGCTCCTGGCTTAAATGCATCCCCTCTCAAAATTTAAAAAAAATGCTTCAGGTGGCTTATTTGGCAGATCTTTTCTTGGACAAAAACAAAGACTATGTGGTAGCAGAACATCAGGCCCTCTTGACAGCTTCAAAATGCTCCTTTGCGAGAGCTTTATTTCCTCCTCAACCAGAGGAAACAGCAAAATCCTCAAAATTTTCTTCCATCGGTTCACGTTTTAAATTACAACTTCAATCTTTAATGGAGACCTTAAATTCAACAGAGCCTCACTACATCAGATGTGTAAAGCCAAACAATGTGCTCAAGCCTGCTATTTTTGAGAACTCAAATGTTATCCAACAATTACGTTGTGGTGGTGTCCTTGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACCAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTTTGGATGGAAACTATGATGACAAGGTGGCATGTCAGATGATCCTGGATAAAATGGGTTTGAAAGGTTATCAGATTGGTAAGACAAAAATCTTCCTGAGGGCTGGGCAGATGGCTTCTCTGGATGCAAAGAGAACAGAGGTGCTGAGCAACGCTGCCAGAACTATTCAAATGCAAATTAGAACATTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACACGTGCAATCATTTAGTCGAGGTGTTTTGGCTCGAAAACTATTTGAGCAGTTGCGGCGGGAAGCAGCAGCTTTAAAGATCCAGAAATGTTTCAAGCGATATATTGCCAGGAAAGCATACTTAGATTTGCTCTCTTCTGCTATCACATTGCAAACAGGGTTAAGGTCAATGAAGGCTCGTGATGAATTCAGATTCAGAAAGCGTACTAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACATGGCGTATTCTTACTACAACAGACTCCAAAAGGCTGCATTATACACGCAGTGTGGTTGGAGGCGACGAGTTGCACGAAAGGAGCTAAGAAATCTGAAAATGGCTGCAAGGGAAACCGGTGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTTACATGGCGCTTGCAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTACAAGATGCTTTACACAGTATGCAATTACAAGTTGAAGAATCAAATACTCAAGTTATCAAAGAGAGAGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTCGTGGAGGATACTGAAAAAATCAATTCCTTAATGGCTGAGGTGGAGAGTTTAAAGGTAGGTTGCAACCAGTTAGCCAATTGTACTTTTCGGTTGGAACAATTGATCACTATATATGCAAGTCTATATAATGCATGGATAGGCAGGAATAACAGGACTGAAATATTGGAGAATCTGCATGAAATACCTTTTCATTCCCTTCAAAATTTGAAGCCAAAAAGTAATGATTGTCTTGGTTTAGCAAATTTATCGATTGGCGATAAGAGGGGATCAGAGGGTTGGGGTTGGTCGTTGGCTTCGCTGCTGTCAGAAAAAACGTCAGCTGAAGAAGCTAGAAAAGCTTGTACAGATGCTGAAGCCAAAAATGTGGAGCTGACTAAAAGGCTTCAAGATGCAGACCAGAAGGTGGATCAACTTCAGGAGTCGGTGCAGAGGCTTGAAGAGAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAACAAGCCTTGACTATGTCGCCAACAGGAAAAGCTTTATCTGCAAGACCGAAGTCAATGATTATTCAGAGGACACCAGAGAATGGAAATATTCCACATGGAGAGGCCAAAGTATCATCGGATACAACTCTTGCATTATCAAATGTCCGTGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAGAAACAGCAGGAGAACCAGGATCTGCTAGTGAAGTGCATATCTCAAGATTTAGGATTTTCTGGAGGCAAACCAATTGCTGCTTGTGTCATATATAAATGTCTTCTTCACTGGAGGTCGTTTGAAGTTGAAAGAACAAGCATATTCGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCAGGATAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACATTATTGTTGCTTCTTCAACACACTCTCAAAGCTAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTACTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGATTAAGGGCATCTCCACAAAGTGCTGGACTATCATTTCTTAATGGTCGGGGGCTTGGTAGATTGGACGATTTTCGGCAGGTTGAGGCGAAGTATCCAGCACTATTGTTTAAGCAGCAGCTTACAGCGTTTTTGGAGAAAATATATGGAATGATAAGGGACAACCTAAAGAAAGAGATTTCGCCTTTACTTGGATTATGCATTCAGGCTCCTAGGACATCCCGGGCGAGCTTAGTGAAAGGGCGCTCCCAAGCAAACGCTATGGCTCAGCAAGCTTTAATTGCTCATTGGCAAAGCATTGTGAAAAGCTTAAACAATTATTTGAAGATCATGAAAGCAAACTATGTTCCTCCATTCTTGGTCCGTAAAGTTTTCACTCAGATATTCTCATTTATTAATGTCCAACTATTTAACAGCCTTCTTTTGCGGCGCGAGTGTTGTTCATTCAGCAATGGCGAGTATGTGAAAGCTGGCTTGTCTGAATTAGAACAGTGGTGTTCTGCCGCAACTGAGGAATATGCAGGGTCTGCCTGGGATGAATTAAAGCACATTAGGCAGGCTGTTGGATTCCTTGTTATACATCAAAAACCCAAAAAGACATTGAATGAGATAACAAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTATATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGTGTATCTTCGGAAGTTATTTCAAGTATGCGAATTCTGATGACTGAAGACTCCAACAATGCCATCAGCTCATTCCTGTTAGATGATGACTCTAGGGTGAAAATCTTGTCTGCACTAGCACGACAAACTGCACGTCAAGTCTCTGTGCATATACTCATTGTTTGTCGCCATTCCATGTGTATAGTTGTATTAAATTCCATCGACCTAGCGACCGAGTTCGAATGGTCGTCTTGGTTGAATTTATTTTGCCTCTCGTGTTACATCGACACTGAGAGGGTCGTTGTCCAGAAGCCATATCACCGAGCGTGA | 4998 | 41.1 | MSGPVNIIVGSHVWIEDPKLAWIDGEVFRINGEEVHVRATNGKTVVTNISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEEREKYKLTDPKSFHYLNQSKCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVNLSLFLSFLCSWLKCIPSQNLKKMLQVAYLADLFLDKNKDYVVAEHQALLTASKCSFARALFPPQPEETAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFSRGVLARKLFEQLRREAAALKIQKCFKRYIARKAYLDLLSSAITLQTGLRSMKARDEFRFRKRTKAAIIIQARLRCHMAYSYYNRLQKAALYTQCGWRRRVARKELRNLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDALHSMQLQVEESNTQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKVGCNQLANCTFRLEQLITIYASLYNAWIGRNNRTEILENLHEIPFHSLQNLKPKSNDCLGLANLSIGDKRGSEGWGWSLASLLSEKTSAEEARKACTDAEAKNVELTKRLQDADQKVDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSSDTTLALSNVREPESEEKPQKSLNEKQQENQDLLVKCISQDLGFSGGKPIAACVIYKCLLHWRSFEVERTSIFDRIIQTIASSIEVQDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLNNYLKIMKANYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSAATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSRVKILSALARQTARQVSVHILIVCRHSMCIVVLNSIDLATEFEWSSWLNLFCLSCYIDTERVVVQKPYHRA | 1665 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3499595 | 3514839 | + | Lsi06G003060.1 | Lsi06g00306 | 665036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00306 | 1665 | Coils | Coil | 904 | 970 | - | - | |
| Lsi06g00306 | 1665 | Pfam | DIL domain | 1455 | 1558 | IPR002710 | - | |
| Lsi06g00306 | 1665 | Gene3D | Kinesin motor domain | 651 | 693 | IPR036961 | - | |
| Lsi06g00306 | 1665 | Pfam | IQ calmodulin-binding motif | 812 | 830 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | Pfam | IQ calmodulin-binding motif | 786 | 805 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | Pfam | IQ calmodulin-binding motif | 859 | 878 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | IQ motif profile. | 810 | 839 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | IQ motif profile. | 881 | 910 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | Myosin motor domain profile. | 62 | 759 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | IQ motif profile. | 785 | 814 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | Gene3D | - | 252 | 310 | - | - | |
| Lsi06g00306 | 1665 | Gene3D | - | 580 | 650 | - | - | |
| Lsi06g00306 | 1665 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | IQ motif profile. | 858 | 884 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | Dilute domain profile. | 1268 | 1579 | IPR002710 | - | |
| Lsi06g00306 | 1665 | Gene3D | - | 860 | 909 | - | - | |
| Lsi06g00306 | 1665 | Gene3D | - | 812 | 859 | - | - | |
| Lsi06g00306 | 1665 | Gene3D | - | 760 | 811 | - | - | |
| Lsi06g00306 | 1665 | ProSiteProfiles | IQ motif profile. | 833 | 862 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | Gene3D | Kinesin motor domain | 65 | 438 | IPR036961 | - | |
| Lsi06g00306 | 1665 | CDD | MYSc_Myo11 | 76 | 747 | IPR036018 | - | |
| Lsi06g00306 | 1665 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 33 | 812 | IPR027417 | - | |
| Lsi06g00306 | 1665 | Pfam | Myosin N-terminal SH3-like domain | 9 | 50 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | Gene3D | - | 439 | 555 | - | - | |
| Lsi06g00306 | 1665 | SMART | iq_5 | 832 | 854 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | SMART | iq_5 | 880 | 902 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | SMART | iq_5 | 784 | 806 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | SMART | iq_5 | 857 | 879 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | SMART | iq_5 | 761 | 783 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | SMART | iq_5 | 809 | 831 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | ProSiteProfiles | IQ motif profile. | 762 | 788 | IPR000048 | GO:0005515 | |
| Lsi06g00306 | 1665 | Coils | Coil | 1102 | 1157 | - | - | |
| Lsi06g00306 | 1665 | CDD | MyosinXI_CBD | 1219 | 1594 | IPR037975 | GO:0007015 | |
| Lsi06g00306 | 1665 | Pfam | Myosin head (motor domain) | 580 | 747 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | Pfam | Myosin head (motor domain) | 64 | 556 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | SMART | DIL_2 | 1454 | 1561 | IPR002710 | - | |
| Lsi06g00306 | 1665 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | PANTHER | MYOSIN | 6 | 556 | - | - | |
| Lsi06g00306 | 1665 | PANTHER | MYOSIN | 1072 | 1597 | - | - | |
| Lsi06g00306 | 1665 | PANTHER | MYOSIN | 580 | 963 | - | - | |
| Lsi06g00306 | 1665 | Gene3D | - | 694 | 757 | - | - | |
| Lsi06g00306 | 1665 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 812 | 910 | IPR027417 | - | |
| Lsi06g00306 | 1665 | PANTHER | MYOSIN-5 | 6 | 556 | - | - | |
| Lsi06g00306 | 1665 | PANTHER | MYOSIN-5 | 1072 | 1597 | - | - | |
| Lsi06g00306 | 1665 | PANTHER | MYOSIN-5 | 580 | 963 | - | - | |
| Lsi06g00306 | 1665 | SMART | MYSc_2a | 56 | 760 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi06g00306 | 1665 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 422 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02634 | Lsi-Chr2:32755926 | Lsi06g00306 | Lsi-Chr6:3499595 | 0 | dispersed | |
| Lsi06g00306 | Lsi-Chr6:3499595 | Lsi11g00416 | Lsi-Chr11:4374341 | 0 | dispersed | |
| Lsi06g00306 | Lsi-Chr6:3499595 | Lsi09g01808 | Lsi-Chr9:26861807 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00306 | K10357 | - | vvi:100266890 | 2336.22 |