Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00309 ATGGCCAACTCTGAATTTCTCTGCTCCTCAGCTCTCTCCAAAACCGATTCTGTTCCTCAATCAAAATCCTTTTCCTCTGTTTCGGCCTCCGAGCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTATCGCATGTTATCAGAGTTTCAAGAGGCTCAAACTGTTGATATCGAAGGCACCACCCTCACCGTCGCTCAGGTCACCGCCATTGCTCGTCGAAGCGAAGTCAACGTCGTCCTGAATGAAGCTGTAGCACATGATCGTGTGGACAAAAGTGCAAAATGGGTTGCTGAGAAAATCTCTAAGGGAATCGATATATATGGAGTTACCACTGGCTTTGGCGCCACCTCCCACCGGCGTACGACCAAAATGGCCGACCTCCAAACAGAACTCATTAGATTCCTCAATGCTGGAGTCATCGGAAAGGACAATCTTCCATCTAGCTACTCAAAGGCGGCCATGCTTGTTAGAACAAACACATTGATGCAAGGCTACTCGGGCATTCGTTGGGATATTCTTGAAGCCGTGGTGAAGCTCATGAATGAGAATTTGATCCCTAAATTGCCTTTAAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCACTGTCTTATATTGCTGGTGTTATCACTGGAAGGCATAATTCCAAGGTTACCACCATTGAAGGCGATGAGATCACTGCCATGGAAGCTCTCAAGCGAGCTGGAATTGCAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTCTTGTCAATGGAACCGCTGTTGGGTCGGCCGTTGCCGCTACAGTTTGCTATGACGCCAACATTTTGGCTCTTTTAGCCGTCATTCTCTCTGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCGGAATTTGCAGACCCGTTGACTCATATGCTTAAGCACCACCCTGGCCAGATAGAATCCGCTGCAGCCATGGAGTTTCTCTTGGACCAAAGCGGTTTTATGAAAGAAGCAAAAATCCGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGCTATGCACTGCGAACCTCTCCACAATGGCTCGGACCCCAAATCGAAGTCATTCGAATGGCAACTCATTCGATAGAAAGGGAAATCAACTCTGTTAATGATAACCCATTAATCGATATCAATCGGGACCAAGCTCTACACGGAGGAAACTTTCAAGGAACCCCAATTGGAGTCTCCATGGATAATCTCCGAATCGCCGTTGCTGCAATTGGAAAGCTAATGTTTGCCCAATTCTCTGAACTCGTCTGTGATCATTACAACAATGGATTACCATCTAATTTGAGCGGTGGACCAAACCATAGCTTGGACTACGGCTTCAAAGGTGCAGAAATCGCCATGGCTGCTTATTGCTCTGAGCTCCAATACCTAGCAAACCCTGTCACAACCCATGTCCAAAGTGCAGAACAACACAATCAAGATGTAAACTCTCTAGGTCTAATCTCAGCAAGAAAATCCGCCGAAGCCATTGAGATTCTCAAGCTCATGTCTGCTACATACATGGTGGCGCTTTGTCAGGCAATCGATTTAAGACAATACGAAGAAAATATGAGGGAAGTAGTGAAAAATGCCCTTCTACAAACCATCAAAAAAACCCTATACGTTGCAGAGTATGGATCTCTTCTCGAATCGCGATTCTGCGAGAAAGACCTATTACAAGTAATCGAGCGCGAGGCGGTCTTCTCCTACATTGACGATCCAACCAACACATCCTACACTCTAATCCCAAAATTACTGGAAGTTTTAGTCGAGAAAGCGCTAAAAGGAGTTACAGCAGGCAAAAGCGAGAATGGAAACGAAACAGGGATTGCCATTTTCAAGCAAATCCCGGGGTTTCTTGAGGAATTAAAGGCGAAATTGGAAAAAGATGTTGAAAATGCAAGAGGGAGATTTGAGAATGGTGATTTCGAAGTGGAAAATAGAATCAAGAAATGCAGCACTTACCCGATTTACCGATTCGTGAGGAGTGAAGTGGGGACTCAATTGTTGAGTGGGGCGAAGAAAGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTGATGAAGGGAAGCTTGGAAATGTTGTGATTCAGTGTTTGAAGAATTAG 2136 45.74 MANSEFLCSSALSKTDSVPQSKSFSSVSASEHWVKAANALSHTHFEEVYRMLSEFQEAQTVDIEGTTLTVAQVTAIARRSEVNVVLNEAVAHDRVDKSAKWVAEKISKGIDIYGVTTGFGATSHRRTTKMADLQTELIRFLNAGVIGKDNLPSSYSKAAMLVRTNTLMQGYSGIRWDILEAVVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTIEGDEITAMEALKRAGIAGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVILSALFCEAMLGKPEFADPLTHMLKHHPGQIESAAAMEFLLDQSGFMKEAKIRNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDINRDQALHGGNFQGTPIGVSMDNLRIAVAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNHSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTIKKTLYVAEYGSLLESRFCEKDLLQVIEREAVFSYIDDPTNTSYTLIPKLLEVLVEKALKGVTAGKSENGNETGIAIFKQIPGFLEELKAKLEKDVENARGRFENGDFEVENRIKKCSTYPIYRFVRSEVGTQLLSGAKKVSPGEDIEKVVEAIDEGKLGNVVIQCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3525133 3527268 - Lsi06G003090.1 Lsi06g00309 665039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00309 711 Pfam Aromatic amino acid lyase 68 536 IPR001106 -
Lsi06g00309 711 Gene3D - 21 261 IPR024083 -
Lsi06g00309 711 PANTHER HISTIDINE AMMONIA-LYASE 35 710 IPR001106 -
Lsi06g00309 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lsi06g00309 711 Gene3D - 528 654 IPR023144 -
Lsi06g00309 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi06g00309 711 CDD PAL-HAL 66 525 IPR001106 -
Lsi06g00309 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Lsi06g00309 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824
Lsi06g00309 711 PANTHER PHENYLALANINE AMMONIA-LYASE 35 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00309 Lsi-Chr6:3525133 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi06g00309 Lsi-Chr6:3525133 Lsi01g01328 Lsi-Chr1:11489995 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00309 K10775 - csv:101205510 1252.65