Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00321 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTTAAATACATGGTTTCTGGTATCCCTATACCTCCTGATCTTCTTTTCAGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGCTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGCAGGAGAACTGATGGGAAAAAGTGGAGATGTTCAAAAGAGGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTCGAAAACAACAGCAACAAATGACATAAACCACCTCTCAAATCCAGCATTTTCTTCCTTAAACAACAACTCATCCTTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTCCTAATGGAAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCAAACAGAAACCCAGATTACAGGTACACTTATGGGCTAAAAGAGGAAGTGGATGAACATGTTTTCTTCTCGAAAGAACCATCTGAAGCCACTGCAAGAACTGATTTCTCTGCTTCGTCCATAGCTAGTTCTTTGCAACTGACACCACTTACGATGAGTTGTTCTTCTCTATACCCAAAACAAAACAACAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGTCTCACAGACCCTTTGAAGCAACAAAAGAGAGAGGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTTGATGATAAATCATCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCATAG 993 42.4 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSTFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVSKTTATNDINHLSNPAFSSLNNNSSLLSYRPFPAHQISSTPNGNGISTKDTNTLLLLEPGSYSNRNPDYRYTYGLKEEVDEHVFFSKEPSEATARTDFSASSIASSLQLTPLTMSCSSLYPKQNNSSSLQSDQSCYQLHQSLTDPLKQQKREESQKTVHRFFDEWPPKERGSWLDFDDKSSNTSSVSTTRLSISIPTASNDFPIFRSKNP 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3633517 3635141 - Lsi06G003210.1 Lsi06g00321 665051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00321 330 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi06g00321 330 Pfam WRC 77 118 IPR014977 -
Lsi06g00321 330 PANTHER - 5 318 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lsi06g00321 330 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi06g00321 330 PANTHER GROWTH-REGULATING FACTOR 6 5 318 - -
Lsi06g00321 330 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi06g00321 330 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00321 Lsi-Chr6:3633517 Lsi08g01545 Lsi-Chr8:23501206 4.40E-39 dispersed
Lsi03g01923 Lsi-Chr3:30623917 Lsi06g00321 Lsi-Chr6:3633517 1.43E-39 transposed
Lsi07g00619 Lsi-Chr7:6656173 Lsi06g00321 Lsi-Chr6:3633517 1.02E-73 transposed
Lsi10g00222 Lsi-Chr10:3565565 Lsi06g00321 Lsi-Chr6:3633517 1.59E-61 transposed
Lsi11g00160 Lsi-Chr11:1725553 Lsi06g00321 Lsi-Chr6:3633517 5.27E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25469 PF08879 WRC 1.10E-20 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00321 - - csv:101207344 598.971