Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00338 ATGACGACGAAGAAGAAGATTTCATGGAGGTCATTTCTGCCGCCGATCTGCGGCGGCGAGTTGCCGGCAAAGGCGACGAAGAAGGTGGCGGCTAAACAAAGTTCTTTCACAAGACTTTCCCAACTCGATTTAAGCAATCCGAATTCTCTTCTCTCGGAGGATCTTTCAATATCTCTAGCCGGCTCTAACATTCATATGTTCACTTTGGGAGAAATTAAGCTCATGACACAAACTTTCTCCACCGGAAATTTCATCGGAGAAGGCGGGTTCGGACCCGTCTATAAAGGATTCATCGATGATAAGCTTCGCCCCGGCCTCAAGGCTCAACCTGTCGCCGTCAAGCTCTTGGACTTAGACGGCACTCAAGGCCACCGCGAGTGGCTGACGGAAGTGATATTTTTGGGACAATTACGAGATCCTCATTTGGTTAAATTGATTGGATATTGTTGCGAAGACGAACATAGGGTGTTGGTTTATGAGTACATGCCAAGAGGAAGTTTAGAGAACCAACTTTTCAGAAGATTTTCAGTGTCATTATCATGGTCAACAAGAATGAAAATAGCTTTAGGAGCTGCCAAGGGATTGGCCTTTCTCCATGGAGCTGCAAAACCAGTGATTTATAGAGATTTCAAAGCTTCCAATATCTTGTTGGATTCAGATTACAATGCAAAGCTTTCAGATTTTGGGTTGGCTAAAGATGGCCCTGATGGAGATGACACCCATGTCTCGACCAGGGTTATGGGTACCGAAGGCTACGCGGCTCCTGAATATGTTATGACCGGTCATTTGACGGCGATGAGTGATGTGTATAGTTTTGGAGTAGTACTTTTGGAGTTGTTGACTGGACGACGGTCGCTCGAGAGGAGCCGGCCTCACCGAGAGCAGAATTTGGTTGAGTTTGCGCGGCCGATGTTGAATGACCACCGAAAGCTTAGTCGGATCATTGATACAAGACTAGAAGGGCAGTACTCGGAGACTGGAGCAAGAAAGGCGGCGACATTAGCGTACCAATGCTTGAGCCACCGCCCGAAGCAACGGCCGACAATGAGCGAAGTGGTGAAAATCTTGGAGCCACTTAAGGACTACCAAGACATGCCCATTGGAACCTTTGTTTTCGAGATGTCGGAGAAGGTTTCGGCATCAAAGGGAAGCGAAACTCCGAAAAGAGAAGAAAAGAGAGAGAACAATGGAAGACAGCAAAATGGCCATCATAGACAAAACCATCATCTCCGAAACCCTAGATCGCCGAATTCATTGTCGGAAAATGGGGTGAGCAATGGCAACCGACGGCCAACGAGCTCACCGTTGCACCCGAGAGGTGGCGGCAGCCGGAGACCATAG 1341 48.1 MTTKKKISWRSFLPPICGGELPAKATKKVAAKQSSFTRLSQLDLSNPNSLLSEDLSISLAGSNIHMFTLGEIKLMTQTFSTGNFIGEGGFGPVYKGFIDDKLRPGLKAQPVAVKLLDLDGTQGHREWLTEVIFLGQLRDPHLVKLIGYCCEDEHRVLVYEYMPRGSLENQLFRRFSVSLSWSTRMKIALGAAKGLAFLHGAAKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPDGDDTHVSTRVMGTEGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSLERSRPHREQNLVEFARPMLNDHRKLSRIIDTRLEGQYSETGARKAATLAYQCLSHRPKQRPTMSEVVKILEPLKDYQDMPIGTFVFEMSEKVSASKGSETPKREEKRENNGRQQNGHHRQNHHLRNPRSPNSLSENGVSNGNRRPTSSPLHPRGGGSRRP 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3749093 3751218 + Lsi06G003380.1 Lsi06g00338 665068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00338 446 PANTHER OS01G0588500 PROTEIN-RELATED 25 400 - -
Lsi06g00338 446 Gene3D Phosphorylase Kinase; domain 1 45 161 - -
Lsi06g00338 446 Pfam Protein tyrosine and serine/threonine kinase 82 356 IPR001245 GO:0004672|GO:0006468
Lsi06g00338 446 MobiDBLite consensus disorder prediction 382 401 - -
Lsi06g00338 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lsi06g00338 446 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 25 400 - -
Lsi06g00338 446 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00338 446 MobiDBLite consensus disorder prediction 378 446 - -
Lsi06g00338 446 Gene3D Transferase(Phosphotransferase) domain 1 162 371 - -
Lsi06g00338 446 MobiDBLite consensus disorder prediction 412 433 - -
Lsi06g00338 446 SUPERFAMILY Protein kinase-like (PK-like) 64 378 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00338 Lsi11g00157 CCT
Lsi06g00338 Lsi11g00157 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00338 Lsi-Chr6:3749093 Lsi10g01383 Lsi-Chr10:17946063 3.34E-139 dispersed
Lsi04g00691 Lsi-Chr4:6338783 Lsi06g00338 Lsi-Chr6:3749093 1.39E-28 transposed
Lsi04g01794 Lsi-Chr4:25163703 Lsi06g00338 Lsi-Chr6:3749093 8.55E-35 transposed
Lsi07g00761 Lsi-Chr7:8296963 Lsi06g00338 Lsi-Chr6:3749093 1.40E-123 transposed
Lsi11g00157 Lsi-Chr11:1698623 Lsi06g00338 Lsi-Chr6:3749093 0 wgd
Lsi02g02895 Lsi-Chr2:35180165 Lsi06g00338 Lsi-Chr6:3749093 3.66E-126 wgd
Lsi04g01378 Lsi-Chr4:21580363 Lsi06g00338 Lsi-Chr6:3749093 1.27E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83702 PF07714 PK_Tyr_Ser-Thr 6.90E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00338 - - csv:101209291 770.77