Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00340 ATGGGGTCCATGGCTTCTCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTGTGTCTTCGTGAATGCCAAGAAAACCTACATTGTTCGTATGAAACATAATGCTCTGCCATCACAGTATCTCACCCACCATGACTGGTACTCTGCTCATCTTCAATCTCTCTCTTCATCTTCCCCCTCTGATTCCCTTCTCTATACCTACACTTCCGCCTACCATGGCTTCGCTGCTTCTCTGGATTCAGATGAAGCAGAATTGCTCCGCCAATCCGATTCAGTTCTGGGTGTTTATGAAGACACTGTTTACAATCTTCACACCACTCGAACTCCGGGATTCCTTGGTCTCGACTCCGATTTCGGGTTATGGGAAGGTCACAACACTCAGGATCTCAACCAAGCTTCTCACGATGTCATCATTGGGGTTCTCGATACTGGGATTTGGCCGGAATCAAAGAGCTTTGATGACGCTGGAATGCCGGAGATCCCATCACGGTGGCGTGGAGAATGTGAATCAGGACCTGATTTCAATCCTTCTCTCTGTAACAAGAAACTAATCGGAGCTCGTAGCTTCTCCAAGGGTTATCAAATGGCTTCCGGTGGTGGGTATTTCAGAAAACCTAGAGAAAACGAGTCTCCTCGAGATCAGGACGGCCATGGAACGCACACAGCGAGCACAGCTGCTGGTTCACATGTGGCTAACGCGAGCTTACTTGGTTATGCCAGAGGCATTGCTAGAGGAATGGCTCCTCAAGCAAGAGTTGCTGCTTACAAGACTTGTTGGCCTACTGGTTGCTTTGGATCTGACATTCTTGCCGGTATGGATCGGGCGATATCCGACGGCGTCGATGTACTTTCACTCTCTTTAGGTGGTGGCTCTGCTCCGTATTACAGAGATACCATAGCAATCGGAGCATTTGCAGCCATGGAGAAAGGGGTTTTTGTTTCCTGCTCAGCTGGGAACAGTGGACCAAATAAGGCTTCTCTAGCCAATGTAGCACCGTGGATCATGACAGTCGGAGCTGGAACGCTCGACCGGGACTTCCCAGCTTATGTCCAGCTTGGAAATGGTAAACGGTTCACTGGAGTGTCACTTTACAGTGGGCAAGGAATGGGGAGTAAGCCGGTGGAATTGGTGTACAACAAAGGAAGTAACACCTCTAGCAATATGTGCTTGCCGGGATCTCTCGAGCCGTCGGTGGTTCGGGGGAAGGTGGTGGTTTGTGACAGAGGAATCAATGCCAGAGTAGAAAAGGGAGGAGTGGTGCGAGATGCAGGTGGGATTGGGATGATTCTGGCAAACACAGCAGCTAGTGGGGAGGAATTGGTGGCTGACAGTCACTTGCTGCCAGCCGTGGCGGTGGGCAGGAAAACCGGTGACTTAATCCGGCAGTATGTTCGGTCCATTTCGAATCCAACGGCAGTGCTGAGCTTCGGTGGGACAATTCTGAACGTCCGCCCATCTCCAGTGGTGGCGGCGTTTAGTTCTAGAGGACCCAACTTGGTAACTCCACAAATCCTAAAGCCAGACGTTATTGGTCCTGGCGTTAACATCCTGGCTGCTTGGTCTGAGTCCATTGGACCTACTGGATTGGACAATGACAAGAGGAAAACTCAGTTCAATATTATGTCAGGAACTTCCATGTCTTGCCCACATATAAGTGGGTTGGCAGCATTGCTAAAGGCAGCTCATCCACAATGGAGTCCAAGTGCAATCAAATCCGCGTTAATGACAACCGCATACACGCAGGACAACACCAACTCGTCTCTCCGAGATGCGGCCGGAGGGGGATTTTCCAATCCATGGGCTCATGGAGCTGGCCATGTTGATCCTCACAAAGCTCTCTCCCCTGGCCTTCTATACGATATCTCCACTGATGATTACATTGCCTTCTTGTGCTCCTTGGACTATGGGATCGATCATGTTCAGGCAATCGTGAAACGGTCGAACATAACCTGCTCTAGGAAGTTTGCTGATCCAGGACAACTTAACTACCCTTCATTTTCAGTTGTGTTTGGGAGCAAGAGGGTTGTTCGGTACACTCGTATCGTCACCAATGTTGGGGCTGCAGGGTCAGTTTACGAAGTGGCTACTACTGCACCGTCTGTTGTGAATGTGACTGTAAAACCTTCAAAGCTTGTGTTTACTAAAGTTGGGGAGAGGAAGAGGTACACTGTTACATTCGTGGCGAGTAGGGATGCTGCTCAAACCACGAGATTTGGGTTCGGGTCGATTGAGTGGAGCAATGACCAACACCAAGTTAGAAGCCCAGTGGCATTTGCCTGGACAAGGTTGTGA 2310 49.57 MGSMASHFLLLLLLLLLLLLLLPCVFVNAKKTYIVRMKHNALPSQYLTHHDWYSAHLQSLSSSSPSDSLLYTYTSAYHGFAASLDSDEAELLRQSDSVLGVYEDTVYNLHTTRTPGFLGLDSDFGLWEGHNTQDLNQASHDVIIGVLDTGIWPESKSFDDAGMPEIPSRWRGECESGPDFNPSLCNKKLIGARSFSKGYQMASGGGYFRKPRENESPRDQDGHGTHTASTAAGSHVANASLLGYARGIARGMAPQARVAAYKTCWPTGCFGSDILAGMDRAISDGVDVLSLSLGGGSAPYYRDTIAIGAFAAMEKGVFVSCSAGNSGPNKASLANVAPWIMTVGAGTLDRDFPAYVQLGNGKRFTGVSLYSGQGMGSKPVELVYNKGSNTSSNMCLPGSLEPSVVRGKVVVCDRGINARVEKGGVVRDAGGIGMILANTAASGEELVADSHLLPAVAVGRKTGDLIRQYVRSISNPTAVLSFGGTILNVRPSPVVAAFSSRGPNLVTPQILKPDVIGPGVNILAAWSESIGPTGLDNDKRKTQFNIMSGTSMSCPHISGLAALLKAAHPQWSPSAIKSALMTTAYTQDNTNSSLRDAAGGGFSNPWAHGAGHVDPHKALSPGLLYDISTDDYIAFLCSLDYGIDHVQAIVKRSNITCSRKFADPGQLNYPSFSVVFGSKRVVRYTRIVTNVGAAGSVYEVATTAPSVVNVTVKPSKLVFTKVGERKRYTVTFVASRDAAQTTRFGFGSIEWSNDQHQVRSPVAFAWTRL 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3784647 3788086 + Lsi06G003400.1 Lsi06g00340 665070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00340 769 Gene3D - 349 487 - -
Lsi06g00340 769 SUPERFAMILY Subtilisin-like 109 623 IPR036852 GO:0004252|GO:0006508
Lsi06g00340 769 Gene3D Peptidase S8/S53 domain 141 632 IPR036852 GO:0004252|GO:0006508
Lsi06g00340 769 ProSiteProfiles Serine proteases, subtilase domain profile. 123 619 - -
Lsi06g00340 769 MobiDBLite consensus disorder prediction 203 230 - -
Lsi06g00340 769 Gene3D - 636 766 - -
Lsi06g00340 769 CDD Peptidases_S8_3 107 585 IPR034197 -
Lsi06g00340 769 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 22 766 IPR045051 -
Lsi06g00340 769 Pfam Subtilase family 140 590 IPR000209 GO:0006508|GO:0008236
Lsi06g00340 769 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 27 110 IPR037045 -
Lsi06g00340 769 Pfam Peptidase inhibitor I9 32 110 IPR010259 -
Lsi06g00340 769 ProSitePatterns Serine proteases, subtilase family, serine active site. 549 559 IPR023828 -
Lsi06g00340 769 Pfam Fibronectin type-III domain 666 763 IPR041469 -
Lsi06g00340 769 PANTHER CUCUMISIN-RELATED 22 766 - -
Lsi06g00340 769 SUPERFAMILY Protease propeptides/inhibitors 31 108 - -
Lsi06g00340 769 CDD PA_subtilisin_like 355 478 - -
Lsi06g00340 769 PRINTS Subtilisin serine protease family (S8) signature 219 232 IPR015500 -
Lsi06g00340 769 PRINTS Subtilisin serine protease family (S8) signature 548 564 IPR015500 -
Lsi06g00340 769 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Lsi06g00340 769 Pfam PA domain 381 465 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00922 Lsi-Chr1:7459533 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi04g01155 Lsi-Chr4:16301953 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi04g01156 Lsi-Chr4:16379761 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi05g01289 Lsi-Chr5:20693666 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi06g00340 Lsi-Chr6:3784647 Lsi08g01515 Lsi-Chr8:23224529 0 dispersed
Lsi09g00344 Lsi-Chr9:3558100 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi04g00155 Lsi-Chr4:1753882 Lsi06g00340 Lsi-Chr6:3784647 6.17E-99 transposed
Lsi05g01054 Lsi-Chr5:18063681 Lsi06g00340 Lsi-Chr6:3784647 0 transposed
Lsi08g01526 Lsi-Chr8:23322442 Lsi06g00340 Lsi-Chr6:3784647 4.71E-148 transposed
Lsi11g00788 Lsi-Chr11:9148837 Lsi06g00340 Lsi-Chr6:3784647 4.28E-107 transposed
Lsi02g02892 Lsi-Chr2:35145004 Lsi06g00340 Lsi-Chr6:3784647 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00340 - - csv:101209781 1434.47